WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs Y Liao, J Wang, EJ Jaehnig, Z Shi, B Zhang Nucleic acids research 47 (W1), W199-W205, 2019 | 2563 | 2019 |
WebGestalt: an integrated system for exploring gene sets in various biological contexts B Zhang, S Kirov, J Snoddy Nucleic acids research 33 (suppl_2), W741-W748, 2005 | 1994 | 2005 |
LinkedOmics: analyzing multi-omics data within and across 32 cancer types SV Vasaikar, P Straub, J Wang, B Zhang Nucleic acids research 46 (D1), D956-D963, 2018 | 1752 | 2018 |
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013 J Wang, D Duncan, Z Shi, B Zhang Nucleic acids research 41 (W1), W77-W83, 2013 | 1743 | 2013 |
Proteogenomics connects somatic mutations to signalling in breast cancer P Mertins, M DR, R KV, G MA, C KR, W P, W X, Q JW, C S, P F, K E, M F, ... Nature 534 (7605), 55-62, 2016 | 1570 | 2016 |
Proteogenomic characterization of human colon and rectal cancer B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ... Nature 513 (7518), 382-387, 2014 | 1415 | 2014 |
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit J Wang, S Vasaikar, Z Shi, M Greer, B Zhang Nucleic acids research 45 (W1), W130-W137, 2017 | 1034 | 2017 |
Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 923 | 2016 |
How many human proteoforms are there? R Aebersold, JN Agar, IJ Amster, MS Baker, CR Bertozzi, ES Boja, ... Nature chemical biology 14 (3), 206-214, 2018 | 809 | 2018 |
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma Q Gao, H Zhu, L Dong, W Shi, R Chen, Z Song, C Huang, J Li, X Dong, ... Cell 179 (2), 561-577. e22, 2019 | 780 | 2019 |
Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer JJ Smith, NG Deane, F Wu, NB Merchant, B Zhang, A Jiang, P Lu, ... Gastroenterology 138 (3), 958-968, 2010 | 696 | 2010 |
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 592 | 2019 |
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies B Zhang, D Schmoyer, S Kirov, J Snoddy BMC bioinformatics 5 (1), 16, 2004 | 553 | 2004 |
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 485 | 2020 |
Detecting differential and correlated protein expression in label-free shotgun proteomics B Zhang, NC VerBerkmoes, MA Langston, E Uberbacher, RL Hettich, ... Journal of proteome research 5 (11), 2909-2918, 2006 | 481 | 2006 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 472 | 2019 |
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 416 | 2021 |
Proteomic parsimony through bipartite graph analysis improves accuracy and transparency B Zhang, MC Chambers, DL Tabb Journal of proteome research 6 (9), 3549-3557, 2007 | 400 | 2007 |
KRAS-dependent sorting of miRNA to exosomes DJ Cha, JL Franklin, Y Dou, Q Liu, JN Higginbotham, MD Beckler, ... Elife 4, e07197, 2015 | 376 | 2015 |
Proteogenomic Characterization of Endometrial Carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 343 | 2020 |