Producing polished prokaryotic pangenomes with the Panaroo pipeline G Tonkin-Hill, N MacAlasdair, C Ruis, A Weimann, G Horesh, JA Lees, ... Genome biology 21, 1-21, 2020 | 496 | 2020 |
Fast and flexible bacterial genomic epidemiology with PopPUNK JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ... Genome research 29 (2), 304-316, 2019 | 279 | 2019 |
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS G Tonkin-Hill, JA Lees, SD Bentley, SDW Frost, J Corander Wellcome Open Research 3, 2018 | 214 | 2018 |
Fast hierarchical Bayesian analysis of population structure G Tonkin-Hill, JA Lees, SD Bentley, SDW Frost, J Corander Nucleic acids research 47 (11), 5539-5549, 2019 | 201 | 2019 |
An integrated national scale SARS-CoV-2 genomic surveillance network T COVID The Lancet. Microbe 1 (3), e99, 2020 | 173 | 2020 |
Patterns of within-host genetic diversity in SARS-CoV-2 G Tonkin-Hill, I Martincorena, R Amato, ARJ Lawson, M Gerstung, ... Elife 10, e66857, 2021 | 136 | 2021 |
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era AK Pöntinen, J Top, S Arredondo-Alonso, G Tonkin-Hill, AR Freitas, ... Nature Communications 12 (1), 1-13, 2021 | 93 | 2021 |
The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen–encoding var genes GQ Tonkin-Hill, L Trianty, R Noviyanti, HHT Nguyen, BF Sebayang, ... PLoS biology 16 (3), e2004328, 2018 | 73 | 2018 |
A comprehensive and high-quality collection of Escherichia coli genomes and their genes G Horesh, GA Blackwell, G Tonkin-Hill, J Corander, E Heinz, ... Microbial genomics 7 (2), 2021 | 59 | 2021 |
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial … RA Gladstone, A McNally, AK Pöntinen, G Tonkin-Hill, JA Lees, K Skytén, ... The Lancet Microbe 2 (7), e331-e341, 2021 | 55 | 2021 |
The inner ear proteome of fish ORB Thomas, SE Swearer, EA Kapp, P Peng, GQ Tonkin‐Hill, ... The FEBS journal 286 (1), 66-81, 2019 | 55 | 2019 |
Genome-wide epistasis and co-selection study using mutual information J Pensar, S Puranen, B Arnold, N MacAlasdair, J Kuronen, G Tonkin-Hill, ... Nucleic acids research 47 (18), e112-e112, 2019 | 42 | 2019 |
Pneumococcal within-host diversity during colonization, transmission and treatment G Tonkin-Hill, C Ling, C Chaguza, SJ Salter, P Hinfonthong, E Nikolaou, ... Nature Microbiology 7 (11), 1791-1804, 2022 | 36 | 2022 |
Population genomics of virulence genes of Plasmodium falciparum in clinical isolates from Uganda S Ruybal-Pesántez, KE Tiedje, G Tonkin-Hill, TS Rask, MR Kamya, ... Scientific reports 7 (1), 1-12, 2017 | 32 | 2017 |
Genomic epidemiology of COVID-19 in care homes in the east of England WL Hamilton, G Tonkin-Hill, ER Smith, D Aggarwal, CJ Houldcroft, ... Elife 10, e64618, 2021 | 30 | 2021 |
Tentacle transcriptomes of the speckled anemone (Actiniaria: Actiniidae: Oulactis Sp.): Venom-related components and their domain structure ML Mitchell, GQ Tonkin-Hill, RAV Morales, AW Purcell, AT Papenfuss, ... Marine Biotechnology 22 (2), 207-219, 2020 | 27 | 2020 |
A high parasite density environment induces transcriptional changes and cell death in Plasmodium falciparum blood stages ES Chou, SZ Abidi, M Teye, A Leliwa‐Sytek, TS Rask, SA Cobbold, ... The FEBS journal 285 (5), 848-870, 2018 | 26 | 2018 |
The use of imaging mass spectrometry to study peptide toxin distribution in Australian sea anemones ML Mitchell, BR Hamilton, B Madio, RAV Morales, GQ Tonkin-Hill, ... Australian Journal of Chemistry 70 (11), 1235-1237, 2017 | 23 | 2017 |
Common virulence gene expression in adult first-time infected malaria patients and severe cases JS Wichers, G Tonkin-Hill, T Thye, R Krumkamp, B Kreuels, J Strauss, ... Elife 10, e69040, 2021 | 22 | 2021 |
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism C Chaguza, M Yang, JE Cornick, M du Plessis, RA Gladstone, ... Communications Biology 3 (1), 1-12, 2020 | 21 | 2020 |