A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 236 | 2021 |
Dissecting Vancomycin-Intermediate Resistance in Staphylococcus aureus Using Genome-Wide Association MT Alam, RA Petit III, EK Crispell, TA Thornton, KN Conneely, Y Jiang, ... Genome biology and evolution 6 (5), 1174-1185, 2014 | 167 | 2014 |
Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828 TD Read, RA Petit, SJ Joseph, MT Alam, MR Weil, M Ahmad, R Bhimani, ... BMC genomics 18, 1-10, 2017 | 99 | 2017 |
Bactopia: a flexible pipeline for complete analysis of bacterial genomes RA Petit III, TD Read Msystems 5 (4), 10.1128/msystems. 00190-20, 2020 | 97 | 2020 |
Transmission and microevolution of USA300 MRSA in US households: evidence from whole-genome sequencing MT Alam, TD Read, RA Petit III, S Boyle-Vavra, LG Miller, SJ Eells, ... MBio 6 (2), 10.1128/mbio. 00054-15, 2015 | 96 | 2015 |
Staphylococcus aureus viewed from the perspective of 40,000+ genomes RA Petit III, TD Read PeerJ 6, e5261, 2018 | 88 | 2018 |
Genotypic and phenotypic diversity of Staphylococcus aureus isolates from cystic fibrosis patient lung infections and their interactions with Pseudomonas aeruginosa EE Bernardy, RA Petit III, V Raghuram, AM Alexander, TD Read, ... MBio 11 (3), 10.1128/mbio. 00735-20, 2020 | 53 | 2020 |
The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species MT Alam, RA Petit III, TD Read, ADM Dove Gene 539 (1), 44-49, 2014 | 53 | 2014 |
Genome sequence-based discriminator for vancomycin-intermediate Staphylococcus aureus L Rishishwar, RA Petit III, CS Kraft, IK Jordan Journal of bacteriology 196 (5), 940-948, 2014 | 38 | 2014 |
Invasive methicillin-resistant Staphylococcus aureus USA500 strains from the US Emerging Infections Program constitute three geographically distinct lineages MB Frisch, S Castillo-Ramírez, RA Petit III, MM Farley, SM Ray, ... MSphere 3 (3), 10.1128/msphere. 00571-17, 2018 | 35 | 2018 |
Comparing whole‐genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures KL Bell, RA Petit III, A Cutler, EK Dobbs, JM Macpherson, TD Read, ... Ecology and Evolution 11 (22), 16082-16098, 2021 | 30 | 2021 |
Human mAbs to Staphylococcus aureus IsdA Provide Protection Through Both Heme-Blocking and Fc-Mediated Mechanisms MR Bennett, RG Bombardi, N Kose, EH Parrish, MB Nagel, RA Petit III, ... The Journal of infectious diseases 219 (8), 1264-1273, 2019 | 28 | 2019 |
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ... Journal of bacteriology 193 (20), 5879-5880, 2011 | 28 | 2011 |
USA300 Staphylococcus aureus persists on multiple body sites following an infection TD Read, RA Petit, Z Yin, T Montgomery, MC McNulty, MZ David BMC microbiology 18, 1-12, 2018 | 26 | 2018 |
Staphylococcus aureus viewed from the perspective of 40,000 genomes. PeerJ 6: e5261 RA Petit III, TD Read | 24 | 2018 |
Whole-genome sequences of Staphylococcus aureus isolates from cystic fibrosis lung infections EE Bernardy, RA Petit III, AG Moller, JA Blumenthal, AJ McAdam, ... Microbiology Resource Announcements 8 (3), 10.1128/mra. 01564-18, 2019 | 20 | 2019 |
Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations V Raghuram, AM Alexander, HQ Loo, RA Petit III, JB Goldberg, TD Read Microbiology spectrum 10 (1), e01334-21, 2022 | 19 | 2022 |
Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains M Su, JT Lyles, RA Petit III, J Peterson, M Hargita, H Tang, C Solis-Lemus, ... PeerJ 8, e8717, 2020 | 17 | 2020 |
Bactopia: a flexible pipeline for complete analysis of bacterial genomes. mSystems 5: e00190-20 RA Petit, TD Read, N Segata | 13 | 2020 |
Invasive nontypeable Haemophilus influenzae infection among adults with HIV in metropolitan Atlanta, Georgia, 2008-2018 LF Collins, FP Havers, A Tunali, S Thomas, JA Clennon, Z Wiley, ... Jama 322 (24), 2399-2410, 2019 | 13 | 2019 |