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From sequences to shapes and back: a case study in RNA secondary structures P Schuster, W Fontana, PF Stadler, IL Hofacker Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994 | 1085 | 1994 |
Fast and reliable prediction of noncoding RNAs S Washietl, IL Hofacker, PF Stadler Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005 | 864 | 2005 |
Secondary structure prediction for aligned RNA sequences IL Hofacker, M Fekete, PF Stadler Journal of molecular biology 319 (5), 1059-1066, 2002 | 826 | 2002 |
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Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS computational biology 3 (4), e65, 2007 | 594 | 2007 |
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler Nature biotechnology 23 (11), 1383-1390, 2005 | 479 | 2005 |
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams P Kerpedjiev, S Hammer, IL Hofacker Bioinformatics 31 (20), 3377-3379, 2015 | 451 | 2015 |
Thermodynamics of RNA–RNA binding U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ... Bioinformatics 22 (10), 1177-1182, 2006 | 433 | 2006 |
RNA folding at elementary step resolution C Flamm, W Fontana, IL Hofacker, P Schuster Rna 6 (3), 325-338, 2000 | 421 | 2000 |
RNAplex: a fast tool for RNA–RNA interaction search H Tafer, IL Hofacker Bioinformatics 24 (22), 2657-2663, 2008 | 414 | 2008 |
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen Rna 18 (5), 900-914, 2012 | 393 | 2012 |
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7, 1-15, 2006 | 382 | 2006 |
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