| Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 404 | 2013 |
| Characterization and identification of microRNA core promoters in four model species X Zhou, J Ruan, G Wang, W Zhang PLoS computational biology 3 (3), e37, 2007 | 403 | 2007 |
| An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots J Ruan, GD Stormo, W Zhang Bioinformatics 20 (1), 58-66, 2004 | 295 | 2004 |
| A general co-expression network-based approach to gene expression analysis: comparison and applications J Ruan, AK Dean, W Zhang BMC systems biology 4 (1), 8, 2010 | 271 | 2010 |
| Identifying network communities with a high resolution J Ruan, W Zhang Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 77 (1 …, 2008 | 241 | 2008 |
| A novel link prediction algorithm for reconstructing protein–protein interaction networks by topological similarity C Lei, J Ruan Bioinformatics 29 (3), 355-364, 2013 | 215 | 2013 |
| Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana W Zhang, J Ruan, TD Ho, Y You, T Yu, RS Quatrano Bioinformatics 21 (14), 3074-3081, 2005 | 203 | 2005 |
| An efficient spectral algorithm for network community discovery and its applications to biological and social networks J Ruan, W Zhang Seventh IEEE international conference on data mining (ICDM 2007), 643-648, 2007 | 166 | 2007 |
| Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases M Ray, J Ruan, W Zhang Genome biology 9, 1-14, 2008 | 128 | 2008 |
| Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites PJ Uren, SC Burns, J Ruan, KK Singh, AD Smith, LOF Penalva Journal of Biological Chemistry 286 (43), 37063-37066, 2011 | 93 | 2011 |
| Enhancer reprogramming driven by high-order assemblies of transcription factors promotes phenotypic plasticity and breast cancer endocrine resistance M Bi, Z Zhang, YZ Jiang, P Xue, H Wang, Z Lai, X Fu, C De Angelis, ... Nature cell biology 22 (6), 701-715, 2020 | 91 | 2020 |
| The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia DL Lovelace, Z Gao, K Mutoji, YC Song, J Ruan, BP Hermann Development 143 (11), 1893-1906, 2016 | 90 | 2016 |
| Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram JE McDunn, KD Husain, AD Polpitiya, A Burykin, J Ruan, Q Li, ... PloS one 3 (2), e1564, 2008 | 82 | 2008 |
| Building and analyzing protein interactome networks by cross-species comparisons AM Wiles, M Doderer, J Ruan, TT Gu, D Ravi, B Blackman, AJR Bishop BMC systems biology 4, 1-16, 2010 | 77 | 2010 |
| Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation K Mitsuya, AN Parker, L Liu, J Ruan, MCM Vissers, L Myatt PloS one 12 (10), e0186115, 2017 | 72 | 2017 |
| Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers RL Huang, F Gu, NB Kirma, J Ruan, CL Chen, HC Wang, YP Liao, ... Epigenetics 8 (6), 624-634, 2013 | 70 | 2013 |
| A network of conserved damage survival pathways revealed by a genomic RNAi screen D Ravi, AM Wiles, S Bhavani, J Ruan, P Leder, AJR Bishop PLoS genetics 5 (6), e1000527, 2009 | 66 | 2009 |
| Intratumoral CD56bright natural killer cells are associated with improved survival in bladder cancer N Mukherjee, N Ji, V Hurez, TJ Curiel, MO Montgomery, AJ Braun, ... Oncotarget 9 (92), 36492, 2018 | 60 | 2018 |
| EpCAM-regulated transcription exerts influences on nanomechanical properties of endometrial cancer cells that promote epithelial-to-mesenchymal transition YT Hsu, P Osmulski, Y Wang, YW Huang, L Liu, J Ruan, VX Jin, NB Kirma, ... Cancer research 76 (21), 6171-6182, 2016 | 56 | 2016 |
| ILM: a web server for predicting RNA secondary structures with pseudoknots J Ruan, GD Stormo, W Zhang Nucleic acids research 32 (suppl_2), W146-W149, 2004 | 50 | 2004 |
Chengwei Lei, Ph.D.Department of Computer & Electrical Engineering/Computer Science, California State University在 csub.edu 的电子邮件经过验证
