| PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes TV Pyrkov, AO Chugunov, NA Krylov, DE Nolde, RG Efremov Bioinformatics 25 (9), 1201-1202, 2009 | 198 | 2009 |
| Processing of heteronuclear NMR relaxation data with the new software DASHA VY Orekhov, DE Nolde, AP Golovanov, DM Korzhnev, AS Arseniev Applied Magnetic Resonance 9, 581-588, 1995 | 110 | 1995 |
| PREDDIMER: a web server for prediction of transmembrane helical dimers AA Polyansky, AO Chugunov, PE Volynsky, NA Krylov, DE Nolde, ... Bioinformatics 30 (6), 889-890, 2014 | 93 | 2014 |
| Lipid-II forms potential “landing terrain” for lantibiotics in simulated bacterial membrane A Chugunov, D Pyrkova, D Nolde, A Polyansky, V Pentkovsky, R Efremov Scientific reports 3 (1), 1678, 2013 | 77 | 2013 |
| Peptides and proteins in membranes: what can we learn via computer simulations? RG Efremov, DE Nolde, AG Konshina, NP Syrtcev, AS Arseniev Current medicinal chemistry 11 (18), 2421-2442, 2004 | 77 | 2004 |
| A solvent model for simulations of peptides in bilayers. I. Membrane-promoting α-helix formation RG Efremov, DE Nolde, G Vergoten, AS Arseniev Biophysical Journal 76 (5), 2448-2459, 1999 | 75 | 1999 |
| Three‐dimensional structure of proteolytic fragment 163–231 of bacterioopsin determined from nuclear magnetic resonance data in solution IL Barsukov, DE Nolde, AL Lomize, AS Arseniev European journal of biochemistry 206 (3), 665-672, 1992 | 75 | 1992 |
| Three-Dimensional Structure of Toxin OSK1 from Orthochirus scrobiculosus Scorpion Venom, VA Jaravine, DE Nolde, MJ Reibarkh, YV Korolkova, SA Kozlov, ... Biochemistry 36 (6), 1223-1232, 1997 | 73 | 1997 |
| Increasing normal modes analysis accuracy: The SPASIBA spectroscopic force field introduced into the CHARMM program P Lagant, D Nolde, R Stote, G Vergoten, M Karplus The Journal of Physical Chemistry A 108 (18), 4019-4029, 2004 | 67 | 2004 |
| Interaction of cardiotoxins with membranes: a molecular modeling study RG Efremov, PE Volynsky, DE Nolde, PV Dubovskii, AS Arseniev Biophysical journal 83 (1), 144-153, 2002 | 64 | 2002 |
| Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans-and juxtamembrane domains AO Chugunov, PE Volynsky, NA Krylov, DE Nolde, RG Efremov Scientific reports 6 (1), 33112, 2016 | 60 | 2016 |
| Role of lipid charge in organization of water/lipid bilayer interface: insights via computer simulations AA Polyansky, PE Volynsky, DE Nolde, AS Arseniev, RG Efremov The Journal of Physical Chemistry B 109 (31), 15052-15059, 2005 | 60 | 2005 |
| Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin RG Efremov, DE Nolde, PE Volynsky, AA Chernyavsky, PV Dubovskii, ... FEBS letters 462 (1-2), 205-210, 1999 | 57 | 1999 |
| A solvent model for simulations of peptides in bilayers. II. Membrane-spanning α-helices RG Efremov, DE Nolde, G Vergoten, AS Arseniev Biophysical journal 76 (5), 2460-2471, 1999 | 52 | 1999 |
| Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom DE Nolde, AG Sobol, KA Pluzhnikov, EV Grishin, AS Arseniev Journal of biomolecular NMR 5, 1-13, 1995 | 40 | 1995 |
| Implicit two-phase solvation model as a tool to assess conformation and energetics of proteins in membrane-mimetic media R Efremov, P Volynsky, D Nolde, G Vergoten, A Arseniev Theoretical Chemistry Accounts 106, 48-54, 2001 | 33 | 2001 |
| Molecular modelling of the nucleotide-binding domain of Wilson's disease protein: location of the ATP-binding site, domain dynamics and potential effects of the major disease … RG Efremov, YA Kosinsky, DE Nolde, R Tsivkovskii, AS Arseniev, ... Biochemical Journal 382 (1), 293-305, 2004 | 32 | 2004 |
| Atomic solvation parameters for proteins in a membrane environment. Application to transmembrane α-helices DE Nolde, AS Arseniev, G Vergoten, RG Efremov Journal of Biomolecular Structure and Dynamics 15 (1), 1-18, 1997 | 31 | 1997 |
| Association of transmembrane helices: what determines assembling of a dimer? RG Efremov, YA Vereshaga, PE Volynsky, DE Nolde, AS Arseniev Journal of computer-aided molecular design 20, 27-45, 2006 | 28 | 2006 |
| Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact DV Pyrkova, NK Tarasova, NA Krylov, DE Nolde, VM Pentkovsky, ... Journal of Biomolecular Structure and Dynamics 31 (1), 87-95, 2013 | 27 | 2013 |
