| A survey of best practices for RNA-seq data analysis A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ... Genome biology 17, 1-19, 2016 | 3100 | 2016 |
| CANTATAdb: a collection of plant long non-coding RNAs MW Szcześniak, W Rosikiewicz, I Makałowska Plant and Cell Physiology 57 (1), e8-e8, 2016 | 156 | 2016 |
| lncRNA-RNA interactions across the human transcriptome MW Szcześniak, I Makałowska PloS one 11 (3), e0150353, 2016 | 94 | 2016 |
| HuntMi: an efficient and taxon-specific approach in pre-miRNA identification A Gudyś, MW Szcześniak, M Sikora, I Makałowska BMC bioinformatics 14, 1-10, 2013 | 88 | 2013 |
| Collagen synthesis disruption and downregulation of core elements of TGF-β, Hippo, and Wnt pathways in keratoconus corneas M Kabza, JA Karolak, M Rydzanicz, MW Szcześniak, DM Nowak, ... European Journal of Human Genetics 25 (5), 582-590, 2017 | 85 | 2017 |
| CANTATAdb 2.0: expanding the collection of plant long noncoding RNAs MW Szcześniak, O Bryzghalov, J Ciomborowska-Basheer, I Makałowska Plant Long Non-Coding RNAs: Methods and Protocols, 415-429, 2019 | 79 | 2019 |
| miRNEST 2.0: a database of plant and animal microRNAs MW Szcześniak, I Makałowska Nucleic acids research 42 (D1), D74-D77, 2014 | 79 | 2014 |
| miRNEST database: an integrative approach in microRNA search and annotation MW Szcześniak, S Deorowicz, J Gapski, Ł Kaczyński, I Makałowska Nucleic acids research 40 (D1), D198-D204, 2012 | 64 | 2012 |
| Natural antisense transcripts in diseases: From modes of action to targeted therapies E Wanowska, MR Kubiak, W Rosikiewicz, I Makałowska, MW Szcześniak Wiley Interdisciplinary Reviews: RNA 9 (2), e1461, 2018 | 60 | 2018 |
| ERISdb: a database of plant splice sites and splicing signals MW Szcześniak, M Kabza, R Pokrzywa, A Gudyś, I Makałowska Plant and Cell Physiology 54 (2), e10-e10, 2013 | 59 | 2013 |
| Primate and rodent specific intron gains and the origin of retrogenes with splice variants MW Szcześniak, J Ciomborowska, W Nowak, IB Rogozin, I Makałowska Molecular Biology and Evolution 28 (1), 33-37, 2011 | 56 | 2011 |
| mirEX: a platform for comparative exploration of plant pri-miRNA expression data D Bielewicz, J Dolata, A Zielezinski, S Alaba, B Szarzynska, ... Nucleic acids research 40 (D1), D191-D197, 2012 | 51 | 2012 |
| Long-term waterlogging as factor contributing to hypoxia stress tolerance enhancement in cucumber: Comparative transcriptome analysis of waterlogging sensitive and tolerant … K Kęska, MW Szcześniak, I Makałowska, M Czernicka Genes 12 (2), 189, 2021 | 34 | 2021 |
| Identification of apple miRNAs and their potential role in fire blight resistance E Kaja, MW Szcześniak, PJ Jensen, MJ Axtell, T McNellis, I Makałowska Tree Genetics & Genomes 11, 1-11, 2015 | 34 | 2015 |
| SyntDB: defining orthologues of human long noncoding RNAs across primates O Bryzghalov, MW Szcześniak, I Makałowska Nucleic acids research 48 (D1), D238-D245, 2020 | 26 | 2020 |
| Sequence-non-specific effects generated by various types of RNA interference triggers M Olejniczak, MO Urbanek, E Jaworska, L Witucki, MW Szczesniak, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (2), 306-314, 2016 | 22 | 2016 |
| Waterlogging-Stress-Responsive LncRNAs, Their Regulatory Relationships with miRNAs and Target Genes in Cucumber (Cucumis sativus L.) K Kęska, MW Szcześniak, A Adamus, M Czernicka International Journal of Molecular Sciences 22 (15), 8197, 2021 | 21 | 2021 |
| MEF2C shapes the microtranscriptome during differentiation of skeletal muscles A Piasecka, M Sekrecki, MW Szcześniak, K Sobczak Scientific Reports 11 (1), 3476, 2021 | 20 | 2021 |
| siRNA release from pri-miRNA scaffolds is controlled by the sequence and structure of RNA P Galka-Marciniak, M Olejniczak, J Starega-Roslan, MW Szczesniak, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (4), 639-649, 2016 | 18 | 2016 |
| KTCNlncDB—a first platform to investigate lncRNAs expressed in human keratoconus and non-keratoconus corneas MW Szcześniak, M Kabza, JA Karolak, M Rydzanicz, DM Nowak, ... Database 2017, baw168, 2017 | 17 | 2017 |
