| Polarizable atomic multipole-based AMOEBA force field for proteins Y Shi, Z Xia, J Zhang, R Best, C Wu, JW Ponder, P Ren Journal of chemical theory and computation 9 (9), 4046-4063, 2013 | 715 | 2013 |
| QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations J Yang, C Hu, H Hu, R Yu, Z Xia, X Ye, J Zhu Bioinformatics 24 (5), 721-723, 2008 | 469 | 2008 |
| Coarse-grained model for simulation of RNA three-dimensional structures Z Xia, DP Gardner, RR Gutell, P Ren The Journal of Physical Chemistry B 114 (42), 13497-13506, 2010 | 105 | 2010 |
| RNA 3D structure prediction by using a coarse-grained model and experimental data Z Xia, DR Bell, Y Shi, P Ren The Journal of Physical Chemistry B 117 (11), 3135-3144, 2013 | 91 | 2013 |
| Molecular dynamics simulations of Ago silencing complexes reveal a large repertoire of admissible ‘seed-less’ targets Z Xia, P Clark, T Huynh, P Loher, Y Zhao, HW Chen, I Rigoutsos, R Zhou Scientific reports 2 (1), 569, 2012 | 83 | 2012 |
| Hydrophobic interaction drives surface-assisted epitaxial assembly of amyloid-like peptides S Kang, T Huynh, Z Xia, Y Zhang, H Fang, G Wei, R Zhou Journal of the American Chemical Society 135 (8), 3150-3157, 2013 | 65 | 2013 |
| Collapse of Unfolded Proteins in a Mixture of Denaturants Z Xia, P Das, EI Shakhnovich, R Zhou Journal of the American Chemical Society, 2012 | 55 | 2012 |
| UV-radiation induced disruption of dry-cavities in human γD-crystallin results in decreased stability and faster unfolding Z Xia, Z Yang, T Huynh, JA King, R Zhou Scientific reports 3 (1), 1560, 2013 | 52 | 2013 |
| Gay-Berne and electrostatic multipole based coarse-grain potential in implicit solvent J Wu, X Zhen, H Shen, G Li, P Ren The Journal of chemical physics 135 (15), 2011 | 42 | 2011 |
| Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus Z Xia, G Jin, J Zhu, R Zhou Bioinformatics 25 (18), 2309-2317, 2009 | 41 | 2009 |
| Recognition mechanism of siRNA by viral p19 suppressor of RNA silencing: a molecular dynamics study Z Xia, Z Zhu, J Zhu, R Zhou Biophysical journal 96 (5), 1761-1769, 2009 | 36 | 2009 |
| Molecular mechanism of surface-assisted epitaxial self-assembly of amyloid-like peptides S Kang, H Li, T Huynh, F Zhang, Z Xia, Y Zhang, R Zhou ACS nano 6 (10), 9276-9282, 2012 | 35 | 2012 |
| A sub-linear, massive-scale look-alike audience extension system a massive-scale look-alike audience extension Q Ma, M Wen, Z Xia, D Chen Workshop on Big Data, Streams and Heterogeneous Source Mining: Algorithms …, 2016 | 32 | 2016 |
| Free-energy simulations reveal that both hydrophobic and polar interactions are important for influenza hemagglutinin antibody binding Z Xia, T Huynh, S Kang, R Zhou Biophysical journal 102 (6), 1453-1461, 2012 | 32 | 2012 |
| The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized) TY Yoo, A Adhikari, Z Xia, T Huynh, KF Freed, R Zhou, TR Sosnick Journal of molecular biology 420 (3), 220-234, 2012 | 30 | 2012 |
| Score look-alike audiences Q Ma, E Wagh, J Wen, Z Xia, R Ormandi, D Chen 2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016 | 26 | 2016 |
| The complex and specific pMHC interactions with diverse HIV-1 TCR clonotypes reveal a structural basis for alterations in CTL function Z Xia, H Chen, S Kang, T Huynh, JW Fang, PA Lamothe, BD Walker, ... Scientific reports 4 (1), 4087, 2014 | 26 | 2014 |
| Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar MC Baxa, W Yu, AN Adhikari, L Ge, Z Xia, R Zhou, KF Freed, TR Sosnick Proceedings of the National Academy of Sciences 112 (27), 8302-8307, 2015 | 24 | 2015 |
| Collapse of a hydrophobic polymer in a mixture of denaturants P Das, Z Xia, R Zhou Langmuir 29 (15), 4877-4882, 2013 | 22 | 2013 |
| A Review of Physics-based Coarse-grained Potentials for the Simulations of Protein Structure and Dynamics H Shen, Z Xia, G Li, P Ren Annual Reports in Computational Chemistry 8, 129-148, 2012 | 20 | 2012 |
Pengyu RenDepartment of Biomedical Engineering, The University of Texas at Austin在 mail.utexas.edu 的电子邮件经过验证
