CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018 | 328 | 2018 |
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018 | 277 | 2018 |
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik Bioinformatics 35 (4), 694-695, 2018 | 86 | 2018 |
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ... Scientific reports 6, 37532, 2016 | 51 | 2016 |
Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields MP Ciemny, AE Badaczewska-Dawid, M Pikuzinska, A Kolinski, ... International journal of molecular sciences 20 (3), 606, 2019 | 47 | 2019 |
Highly flexible protein-peptide docking using CABS-dock MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik Modeling Peptide-Protein Interactions: Methods and Protocols, 69-94, 2017 | 42 | 2017 |
Protein–peptide docking using CABS-dock and contact information M Blaszczyk, MP Ciemny, A Kolinski, M Kurcinski, S Kmiecik Briefings in Bioinformatics, 2018 | 39 | 2018 |
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif MP Ciemny, M Kurcinski, M Blaszczyk, A Kolinski, S Kmiecik Biomedical engineering online 16 (1), 71, 2017 | 15 | 2017 |
A protocol for CABS-dock protein–peptide docking driven by side-chain contact information M Kurcinski, M Blaszczyk, MP Ciemny, A Kolinski, S Kmiecik Biomedical engineering online 16 (1), 73, 2017 | 11 | 2017 |
Protein Structure Prediction Using Coarse-Grained Models M Blaszczyk, D Gront, S Kmiecik, M Kurcinski, M Kolinski, MP Ciemny, ... Computational Methods to Study the Structure and Dynamics of Biomolecules …, 2019 | 4 | 2019 |
Flexible protein-peptide docking using CABS-dock with knowledge about the binding site M Kurcinski, MP Ciemny, M Blaszczyk, A Kolinski, S Kmiecik arXiv preprint arXiv:1605.09269, 2016 | 1 | 2016 |
Towards protein-protein docking with significant structural changes using CABS-dock MP Ciemny, M Kurcinski, A Kolinski, S Kmiecik arXiv preprint arXiv:1605.09266, 2016 | | 2016 |