Oligodendrocyte dynamics in the healthy adult CNS: evidence for myelin remodeling KM Young, K Psachoulia, RB Tripathi, SJ Dunn, L Cossell, D Attwell, ... Neuron 77 (5), 873-885, 2013 | 888 | 2013 |
Chaste: an open source C++ library for computational physiology and biology GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ... PLoS computational biology 9 (3), e1002970, 2013 | 501 | 2013 |
Defining an essential transcription factor program for naive pluripotency SJ Dunn, G Martello, B Yordanov, S Emmott, AG Smith Science 344 (6188), 1156-1160, 2014 | 445 | 2014 |
Computational models reveal a passive mechanism for cell migration in the crypt SJ Dunn, IS Näthke, JM Osborne PloS one 8 (11), e80516, 2013 | 64 | 2013 |
Ten simple rules for effective computational research JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ... PLoS Computational Biology 10 (3), e1003506, 2014 | 58 | 2014 |
A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath SJ Dunn, PL Appleton, SA Nelson, IS Näthke, DJ Gavaghan, JM Osborne PLoS computational biology 8 (5), e1002515, 2012 | 56 | 2012 |
A method to identify and analyze biological programs through automated reasoning B Yordanov, SJ Dunn, H Kugler, A Smith, G Martello, S Emmott NPJ systems biology and applications 2 (1), 1-16, 2016 | 55 | 2016 |
A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis A Mishra, B Oules, AO Pisco, T Ly, K Liakath-Ali, G Walko, P Viswanathan, ... Elife 6, e27356, 2017 | 50 | 2017 |
A common molecular logic determines embryonic stem cell self‐renewal and reprogramming SJ Dunn, MA Li, E Carbognin, A Smith, G Martello The EMBO journal 38 (1), e100003, 2019 | 48 | 2019 |
Modelling the role of the basement membrane beneath a growing epithelial monolayer SJ Dunn, AG Fletcher, SJ Chapman, DJ Gavaghan, JM Osborne Journal of theoretical biology 298, 82-91, 2012 | 38 | 2012 |
Entropy sorting of single-cell RNA sequencing data reveals the inner cell mass in the human pre-implantation embryo A Radley, E Corujo-Simon, J Nichols, A Smith, SJ Dunn Stem Cell Reports 18 (1), 47-63, 2023 | 33 | 2023 |
Combined changes in Wnt signaling response and contact inhibition induce altered proliferation in radiation-treated intestinal crypts SJ Dunn, JM Osborne, PL Appleton, I Näthke Molecular biology of the cell 27 (11), 1863-1874, 2016 | 25 | 2016 |
Computational stem cell biology: open questions and guiding principles P Cahan, D Cacchiarelli, SJ Dunn, M Hemberg, SMC de Sousa Lopes, ... Cell Stem Cell 28 (1), 20-32, 2021 | 21 | 2021 |
Automated synthesis and analysis of switching gene regulatory networks Y Shavit, B Yordanov, SJ Dunn, CM Wintersteiger, T Otani, Y Hamadi, ... Biosystems 146, 26-34, 2016 | 14 | 2016 |
Formal analysis of network motifs H Kugler, SJ Dunn, B Yordanov Computational Methods in Systems Biology: 16th International Conference …, 2018 | 11 | 2018 |
Formal analysis of network motifs links structure to function in biological programs SJ Dunn, H Kugler, B Yordanov IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (1 …, 2019 | 10 | 2019 |
How computational models contribute to our understanding of the germ line K Atwell, SJ Dunn, JM Osborne, H Kugler, EJA Hubbard Molecular reproduction and development 83 (11), 944-957, 2016 | 6 | 2016 |
Automated reasoning for the synthesis and analysis of biological programs SJ Dunn, B Yordanov Automated Reasoning for Systems Biology and Medicine, 37-62, 2019 | 5 | 2019 |
Automated formal reasoning to uncover molecular programs of self-renewal SJ Dunn Computational Stem Cell Biology: Methods and Protocols, 79-105, 2019 | 4 | 2019 |
Switching gene regulatory networks Y Shavit, B Yordanov, SJ Dunn, CM Wintersteiger, Y Hamadi, H Kugler Information Processing in Cells and Tissues: 10th International Conference …, 2015 | 4 | 2015 |