FastTree 2–approximately maximum-likelihood trees for large alignments MN Price, PS Dehal, AP Arkin PloS one 5 (3), e9490, 2010 | 12354 | 2010 |
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression LS Qi, MH Larson, LA Gilbert, JA Doudna, JS Weissman, AP Arkin, ... Cell 152 (5), 1173-1183, 2013 | 5676 | 2013 |
Functional profiling of the Saccharomyces cerevisiae genome G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ... nature 418 (6896), 387-391, 2002 | 5111 | 2002 |
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix MN Price, PS Dehal, AP Arkin Molecular biology and evolution 26 (7), 1641-1650, 2009 | 4562 | 2009 |
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003 | 3812 | 2003 |
Stochastic mechanisms in gene expression HH McAdams, A Arkin Proceedings of the National Academy of Sciences 94 (3), 814-819, 1997 | 2433 | 1997 |
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells A Arkin, J Ross, HH McAdams Genetics 149 (4), 1633-1648, 1998 | 2092 | 1998 |
Control, exploitation and tolerance of intracellular noise CV Rao, DM Wolf, AP Arkin Nature 420 (6912), 231-237, 2002 | 1294 | 2002 |
It’sa noisy business! Genetic regulation at the nanomolar scale HH McAdams, A Arkin Trends in genetics 15 (2), 65-69, 1999 | 1136 | 1999 |
KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1103 | 2018 |
Precise and reliable gene expression via standard transcription and translation initiation elements VK Mutalik, JC Guimaraes, G Cambray, C Lam, MJ Christoffersen, QA Mai, ... Nature methods 10 (4), 354-360, 2013 | 848 | 2013 |
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm CV Rao, AP Arkin The Journal of chemical physics 118 (11), 4999-5010, 2003 | 826 | 2003 |
Environmentally controlled invasion of cancer cells by engineered bacteria JC Anderson, EJ Clarke, AP Arkin, CA Voigt Journal of molecular biology 355 (4), 619-627, 2006 | 766 | 2006 |
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity LS Weinberger, JC Burnett, JE Toettcher, AP Arkin, DV Schaffer Cell 122 (2), 169-182, 2005 | 733 | 2005 |
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem J Zhou, YE Deng, P Zhang, K Xue, Y Liang, JD Van Nostrand, Y Yang, ... Proceedings of the National Academy of Sciences 111 (9), E836-E845, 2014 | 677 | 2014 |
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ... Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004 | 605 | 2004 |
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 595 | 2021 |
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming D Ning, M Yuan, L Wu, Y Zhang, X Guo, X Zhou, Y Yang, AP Arkin, ... Nature communications 11 (1), 4717, 2020 | 530 | 2020 |
MicrobesOnline: an integrated portal for comparative and functional genomics PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ... Nucleic acids research 38 (suppl_1), D396-D400, 2010 | 530 | 2010 |
Environmental genomics reveals a single-species ecosystem deep within Earth D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ... Science 322 (5899), 275-278, 2008 | 528 | 2008 |