3D genomics across the tree of life reveals condensin II as a determinant of architecture type C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ... Science 372 (6545), 984-989, 2021 | 175 | 2021 |
Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures S Brahmachari, JF Marko Proceedings of the National Academy of Sciences 116 (50), 24956-24965, 2019 | 51 | 2019 |
Supercoiling DNA locates mismatches A Dittmore, S Brahmachari, Y Takagi, JF Marko, KC Neuman Physical review letters 119 (14), 147801, 2017 | 29 | 2017 |
Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion S Brahmachari, VG Contessoto, M Di Pierro, JN Onuchic Nucleic Acids Research 50 (8), 4258-4271, 2022 | 27 | 2022 |
DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases S Tripathi, S Brahmachari, JN Onuchic, H Levine Nucleic acids research 50 (3), 1269-1279, 2022 | 21 | 2022 |
Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches PR Desai, S Brahmachari, JF Marko, S Das, KC Neuman Nucleic acids research 48 (19), 10713-10725, 2020 | 21 | 2020 |
Torque and buckling in stretched intertwined double-helix DNAs S Brahmachari, JF Marko Physical Review E 95 (5), 052401, 2017 | 17 | 2017 |
Defect-facilitated buckling in supercoiled double-helix DNA S Brahmachari, A Dittmore, Y Takagi, KC Neuman, JF Marko Physical Review E 97 (2), 022416, 2018 | 15 | 2018 |
DNA mechanics and topology S Brahmachari, JF Marko Biomechanics in Oncology, 11-39, 2018 | 10 | 2018 |
Nucleation of multiple buckled structures in intertwined DNA double helices S Brahmachari, KH Gunn, RD Giuntoli, A Mondragón, JF Marko Physical review letters 119 (18), 188103, 2017 | 8 | 2017 |
PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ... Journal of Molecular Biology 435 (15), 168180, 2023 | 6 | 2023 |
Temporally Correlated Active Forces Drive Segregation and Enhanced Dynamics in Chromosome Polymers S Brahmachari, T Markovich, FC MacKintosh, JN Onuchic PRX Life 2 (3), 033003, 2024 | 4* | 2024 |
Structural reorganization and relaxation dynamics of axially stressed chromosomes BS Ruben, S Brahmachari, VG Contessoto, RR Cheng, ABO Junior, ... Biophysical Journal 122 (9), 1633-1645, 2023 | 4 | 2023 |
Nucleosomes play a dual role in regulating transcription dynamics S Brahmachari, S Tripathi, JN Onuchic, H Levine Proceedings of the National Academy of Sciences 121 (28), e2319772121, 2024 | 1* | 2024 |
Compaction-mediated segregation of partly replicated bacterial chromosome S Brahmachari, AB Oliveira Jr, MF Mello, VG Contessoto, JN Onuchic bioRxiv, 2024.07. 27.604869, 2024 | | 2024 |
Measurement of the torque in braided DNAs using a thermodynamic Maxwell relation B Xiao, S Brahmachari, Y Liu, K Ding, JF Marko bioRxiv, 2020.02. 07.938209, 2020 | | 2020 |