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Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 596 | 2020 |
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Crystal structures of the CusA efflux pump suggest methionine-mediated metal transport F Long, CC Su, MT Zimmermann, SE Boyken, KR Rajashankar, ... Nature 467 (7314), 484-488, 2010 | 259 | 2010 |
De novo design of bioactive protein switches RA Langan, SE Boyken, AH Ng, JA Samson, G Dods, AM Westbrook, ... Nature 572 (7768), 205-210, 2019 | 258 | 2019 |
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De novo design of modular and tunable protein biosensors A Quijano-Rubio, HW Yeh, J Park, H Lee, RA Langan, SE Boyken, ... Nature 591 (7850), 482-487, 2021 | 183 | 2021 |
Programmable design of orthogonal protein heterodimers Z Chen, SE Boyken, M Jia, F Busch, D Flores-Solis, MJ Bick, P Lu, ... Nature 565 (7737), 106-111, 2019 | 180 | 2019 |
Accurate computational design of multipass transmembrane proteins P Lu, D Min, F DiMaio, KY Wei, MD Vahey, SE Boyken, Z Chen, JA Fallas, ... Science 359 (6379), 1042-1046, 2018 | 174 | 2018 |
Designed protein logic to target cells with precise combinations of surface antigens MJ Lajoie, SE Boyken, AI Salter, J Bruffey, A Rajan, RA Langan, ... Science 369 (6511), 1637-1643, 2020 | 152 | 2020 |
De novo design of tunable, pH-driven conformational changes SE Boyken, MA Benhaim, F Busch, M Jia, MJ Bick, H Choi, JC Klima, ... Science 364 (6441), 658-664, 2019 | 146 | 2019 |
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Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry ZL VanAernum, F Busch, BJ Jones, M Jia, Z Chen, SE Boyken, ... Nature protocols 15 (3), 1132-1157, 2020 | 124 | 2020 |
Modular and tunable biological feedback control using a de novo protein switch AH Ng, TH Nguyen, M Gómez-Schiavon, G Dods, RA Langan, SE Boyken, ... Nature 572 (7768), 265-269, 2019 | 112 | 2019 |
Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice AC Hunt, JB Case, YJ Park, L Cao, K Wu, AC Walls, Z Liu, JE Bowen, ... Science translational medicine 14 (646), eabn1252, 2022 | 74 | 2022 |
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Dynamic allostery mediated by a conserved tryptophan in the Tec family kinases N Chopra, TE Wales, RE Joseph, SE Boyken, JR Engen, RL Jernigan, ... PLoS computational biology 12 (3), e1004826, 2016 | 55 | 2016 |
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds KY Wei, D Moschidi, MJ Bick, S Nerli, AC McShan, LP Carter, PS Huang, ... Proceedings of the National Academy of Sciences 117 (13), 7208-7215, 2020 | 51 | 2020 |
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Computational design of mechanically coupled axle-rotor protein assemblies A Courbet, J Hansen, Y Hsia, N Bethel, YJ Park, C Xu, A Moyer, ... Science 376 (6591), 383-390, 2022 | 45 | 2022 |