Chaste: An Open Source C++ Library for Computational Physiology and Biology GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ... PLoS Computational Biology 9 (3), 2013 | 498 | 2013 |
Simulation of multiple ion channel block provides improved early prediction of compounds’ clinical torsadogenic risk GR Mirams, Y Cui, A Sher, M Fink, J Cooper, BM Heath, NC McMahon, ... Cardiovascular research 91 (1), 53-61, 2011 | 338 | 2011 |
Chaste: a test-driven approach to software development for biological modelling J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ... Computer Physics Communications 180 (12), 2452-2471, 2009 | 301 | 2009 |
An integrative computational model for intestinal tissue renewal IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ... Cell proliferation 42 (5), 617-636, 2009 | 180 | 2009 |
CellML and associated tools and techniques A Garny, DP Nickerson, J Cooper, RW Santos, AK Miller, S McKeever, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008 | 172 | 2008 |
Minimum Information About a Simulation Experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS Computational Biology 7 (4), e1001122, 2011 | 164 | 2011 |
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 369, 2014 | 154 | 2014 |
A computational study of discrete mechanical tissue models P Pathmanathan, J Cooper, A Fletcher, G Mirams, P Murray, J Osborne, ... Physical biology 6, 036001, 2009 | 144 | 2009 |
Computational assessment of drug‐induced effects on the electrocardiogram: from ion channel to body surface potentials N Zemzemi, MO Bernabeu, J Saiz, J Cooper, P Pathmanathan, ... British Journal of Pharmacology 168 (3), 718-733, 2013 | 131 | 2013 |
Chaste: using agile programming techniques to develop computational biology software J Pitt-Francis, MO Bernabeu, J Cooper, A Garny, L Momtahan, J Osborne, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008 | 107 | 2008 |
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, A Garny, ... Progress in biophysics and molecular biology 102 (2-3), 136-155, 2010 | 99 | 2010 |
An overview of the CellML API and its implementation A Miller, J Marsh, A Reeve, A Garny, R Britten, M Halstead, J Cooper, ... BMC bioinformatics 11 (1), 178, 2010 | 93 | 2010 |
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in Bioengineering and Biotechnology 3, 2015 | 87 | 2015 |
The Cardiac Electrophysiology Web Lab J Cooper, M Scharm, GR Mirams Biophysical Journal 110 (2), 292-300, 2016 | 68 | 2016 |
Ten simple rules for a successful cross-disciplinary collaboration B Knapp, R Bardenet, MO Bernabeu, R Bordas, M Bruna, B Calderhead, ... PLoS computational biology 11 (4), e1004214, 2015 | 67 | 2015 |
High-throughput functional curation of cellular electrophysiology models J Cooper, GR Mirams, SA Niederer Progress in biophysics and molecular biology 107 (1), 11-20, 2011 | 64 | 2011 |
Chaste: Cancer, Heart and Soft Tissue Environment F Cooper, R Baker, M Bernabeu, R Bordas, L Bowler, A Bueno-Orovio, ... Journal of Open Source Software 5 (47), 1848, 2020 | 62 | 2020 |
A call for virtual experiments: accelerating the scientific process J Cooper, JO Vik, D Waltemath Progress in biophysics and molecular biology 117 (1), 99-106, 2015 | 58 | 2015 |
Ten simple rules for effective computational research JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ... PLoS Comput Biol 10 (3), e1003506, 2014 | 56 | 2014 |
Chaste: incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library MO Bernabeu, R Bordas, P Pathmanathan, J Pitt-Francis, J Cooper, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009 | 48 | 2009 |