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Ya Chen
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Data resources for the computer-guided discovery of bioactive natural products
Y Chen, C de Bruyn Kops, J Kirchmair
Journal of chemical information and modeling 57 (9), 2099-2111, 2017
1732017
Characterization of the chemical space of known and readily obtainable natural products
Y Chen, M Garcia de Lomana, NO Friedrich, J Kirchmair
Journal of chemical information and modeling 58 (8), 1518-1532, 2018
1182018
Cheminformatics in Natural Product‐based Drug Discovery
Y Chen, J Kirchmair
Molecular Informatics 39 (12), 2000171, 2020
1142020
Hit Dexter 2.0: Machine-Learning Models for the Prediction of Frequent Hitters
C Stork, Y Chen, M Šícho, J Kirchmair
Journal of chemical information and modeling 59, 1030–1043, 2019
952019
Validation strategies for target prediction methods
N Mathai, Y Chen, J Kirchmair
Briefings in bioinformatics 21 (3), 791-802, 2020
742020
NERDD: a web portal providing access to in silico tools for drug discovery
C Stork, G Embruch, M Šícho, C de Bruyn Kops, Y Chen, D Svozil, ...
Bioinformatics 36 (4), 1291-1292, 2020
662020
NP-Scout: Machine learning approach for the quantification and visualization of the natural product-likeness of small molecules
Y Chen, C Stork, S Hirte, J Kirchmair
Biomolecules 9 (2), 43, 2019
602019
N-thiadiazole-4-hydroxy-2-quinolone-3-carboxamides bearing heteroaromatic rings as novel antibacterial agents: Design, synthesis, biological evaluation and target identification
W Xue, X Li, G Ma, H Zhang, Y Chen, J Kirchmair, J Xia, S Wu
European Journal of Medicinal Chemistry 188, 112022, 2020
482020
Ring systems in natural products: structural diversity, physicochemical properties, and coverage by synthetic compounds
Y Chen, C Rosenkranz, S Hirte, J Kirchmair
Natural Product Reports 39 (8), 1544-1556, 2022
432022
Natural products against acute respiratory infections: Strategies and lessons learned
J Langeder, U Grienke, Y Chen, J Kirchmair, M Schmidtke, JM Rollinger
Journal of ethnopharmacology 248, 112298, 2020
412020
EGCG reverses human neutrophil elastase-induced migration in A549 cells by directly binding to HNE and by regulating α1-AT
Y Xiaokaiti, H Wu, Y Chen, H Yang, J Duan, X Li, Y Pan, L Tie, L Zhang, ...
Scientific Reports 5 (1), 11494, 2015
322015
Discovery of novel multidrug resistance protein 4 (MRP4) inhibitors as active agents reducing resistance to anticancer drug 6-Mercaptopurine (6-MP) by structure and ligand …
Y Chen, X Yuan, Z Xiao, H Jin, L Zhang, Z Liu
PloS one 13 (10), 2018
292018
HDAC3i‐Finder: a machine learning‐based computational tool to screen for HDAC3 inhibitors
S Li, Y Ding, M Chen, Y Chen, J Kirchmair, Z Zhu, S Wu, J Xia
Molecular Informatics 40 (3), 2000105, 2021
232021
Scope of 3D shape-based approaches in predicting the macromolecular targets of structurally complex small molecules including natural products and macrocyclic ligands
Y Chen, N Mathai, J Kirchmair
Journal of Chemical Information and Modeling 60 (6), 2858–2875, 2020
222020
Resources for chemical, biological, and structural data on natural products
Y Chen, C de Bruyn Kops, J Kirchmair
Progress in the Chemistry of Organic Natural Products 110, 37-71, 2019
132019
Azepine-Indole Alkaloids From Psychotria nemorosa Modulate 5-HT2A Receptors and Prevent in vivo Protein Toxicity in Transgenic Caenorhabditis elegans
B Kirchweger, LC Klein-Junior, D Pretsch, Y Chen, S Cretton, AL Gasper, ...
Frontiers in Neuroscience 16, 826289, 2022
72022
Discovery of N-(Naphtho[1,2-b]Furan-5-Yl) Benzenesulfonamides as Novel Selective Inhibitors of Triple-Negative Breast Cancer (TNBC)
Y Chen, Y Tang, B Mao, W Li, H Jin, L Zhang, Z Liu
Molecules 23 (3), 678, 2018
42018
Molecular models of different states of the human multidrug resistance protein 4 (MRP4/ABCC4)
Y Chen, H Jin, L Zhang, Z Liu
J Chin Pharm Sci 25 (6), 428-37, 2016
32016
Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation
Y Chen, T Seidel, RA Jacob, S Hirte, A Mazzolari, A Pedretti, G Vistoli, ...
Journal of Chemical Information and Modeling 64 (2), 348-358, 2024
22024
Scikit-Mol brings cheminformatics to Scikit-Learn
EJ Bjerrum, RA Bachorz, A Bitton, O Choung, Y Chen, C Esposito, SV Ha, ...
22023
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