MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ... Royal Society open science 2 (7), 150088, 2015 | 1083 | 2015 |
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ... Molecular biology and evolution 30 (11), 2531-2540, 2013 | 736 | 2013 |
MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki Molecular biology and evolution 35 (6), 1553-1555, 2018 | 209 | 2018 |
Environmental DNA enables detection of terrestrial mammals from forest pond water M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ... Molecular Ecology Resources 17 (6), e63-e75, 2017 | 200 | 2017 |
Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ... PloS one 8 (9), e73535, 2013 | 188 | 2013 |
A fast likelihood method to reconstruct and visualize ancestral scenarios SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel Molecular biology and evolution 36 (9), 2069-2085, 2019 | 184 | 2019 |
Generalist species drive microbial dispersion and evolution S Sriswasdi, C Yang, W Iwasaki Nature communications 8 (1), 1162, 2017 | 183 | 2017 |
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria S Yoshizawa, Y Kumagai, H Kim, Y Ogura, T Hayashi, W Iwasaki, ... Proceedings of the National Academy of Sciences 111 (18), 6732-6737, 2014 | 165 | 2014 |
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols T Minamoto, M Miya, T Sado, S Seino, H Doi, M Kondoh, K Nakamura, ... Environmental DNA 3 (1), 8-13, 2021 | 140 | 2021 |
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators DM Needham, S Yoshizawa, T Hosaka, C Poirier, CJ Choi, ... Proceedings of the National Academy of Sciences 116 (41), 20574-20583, 2019 | 131 | 2019 |
Metagenomics and bioinformatics in microbial ecology: current status and beyond S Hiraoka, C Yang, W Iwasaki Microbes and environments 31 (3), 204-212, 2016 | 124 | 2016 |
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ... Molecular and cellular biology, 2014 | 118 | 2014 |
SonicParanoid: fast, accurate and easy orthology inference S Cosentino, W Iwasaki Bioinformatics 35 (1), 149-151, 2019 | 109 | 2019 |
Demonstration of the potential of environmental DNA as a tool for the detection of avian species M Ushio, K Murata, T Sado, I Nishiumi, M Takeshita, W Iwasaki, M Miya Scientific reports 8 (1), 4493, 2018 | 98 | 2018 |
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ... Nature genetics 49 (1), 146-151, 2017 | 91 | 2017 |
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15, 1-15, 2014 | 79 | 2014 |
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi Cell reports 12 (3), 429-440, 2015 | 78 | 2015 |
Functional D-box sequences reset the circadian clock and drive mRNA rhythms H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ... Communications Biology 2 (1), 300, 2019 | 75 | 2019 |
Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum M Takeuchi, Y Kamagata, K Oshima, S Hanada, H Tamaki, K Marumo, ... International Journal of systematic and evolutionary microbiology 64 (Pt_9 …, 2014 | 74 | 2014 |
From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ S Aoki, M Ito, W Iwasaki Molecular biology and evolution 30 (11), 2494-2508, 2013 | 72 | 2013 |