The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution M Van De Guchte, S Penaud, C Grimaldi, V Barbe, K Bryson, P Nicolas, ... Proceedings of the National Academy of Sciences 103 (24), 9274-9279, 2006 | 494 | 2006 |
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K S Chaillou, MC Champomier-Vergès, M Cornet, AM Crutz-Le Coq, ... Nature biotechnology 23 (12), 1527-1533, 2005 | 470 | 2005 |
Overview of BioNLP shared task 2013 C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013 | 283 | 2013 |
Complete genome sequence of the fish pathogen Flavobacterium psychrophilum E Duchaud, M Boussaha, V Loux, JF Bernardet, C Michel, B Kerouault, ... Nature biotechnology 25 (7), 763-769, 2007 | 248 | 2007 |
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system K Bryson, V Loux, R Bossy, P Nicolas, S Chaillou, M Van De Guchte, ... Nucleic acids research 34 (12), 3533-3545, 2006 | 116 | 2006 |
Overview of the bacteria biotope task at bionlp shared task 2016 L Deléger, R Bossy, E Chaix, M Ba, A Ferré, P Bessieres, C Nédellec Proceedings of the 4th BioNLP shared task workshop, 12-22, 2016 | 107 | 2016 |
BioNLP shared task 2013–an overview of the bacteria biotope task R Bossy, W Golik, Z Ratkovic, P Bessieres, C Nédellec Proceedings of the BioNLP shared task 2013 workshop, 161-169, 2013 | 70 | 2013 |
Text mining tools for extracting information about microbial biodiversity in food E Chaix, L Deléger, R Bossy, C Nédellec Food microbiology 81, 63-75, 2019 | 59 | 2019 |
Text mining resources for the life sciences P Przybyła, M Shardlow, S Aubin, R Bossy, R Eckart de Castilho, ... Database 2016, baw145, 2016 | 52 | 2016 |
Bacteria biotope at BioNLP open shared tasks 2019 R Bossy, L Deléger, E Chaix, M Ba, C Nédellec 5th Workshop on BioNLP Open Shared Tasks BioNLP-OST@ EMNLP-IJCNLP 2019 …, 2019 | 50 | 2019 |
Bionlp shared task-the bacteria track R Bossy, J Jourde, AP Manine, P Veber, E Alphonse, M Van De Guchte, ... BMC bioinformatics 13, 1-15, 2012 | 50 | 2012 |
Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task R Bossy, W Golik, Z Ratkovic, D Valsamou, P Bessieres, C Nédellec BMC bioinformatics 16, 1-16, 2015 | 44 | 2015 |
Overview of the regulatory network of plant seed development (seedev) task at the bionlp shared task 2016 E Chaix, B Dubreucq, A Fatihi, D Valsamou, R Bossy, M Ba, L Deléger, ... BioNLP Shared Task, 113, 2016 | 43 | 2016 |
BioNLP shared task 2011-bacteria biotope R Bossy, J Jourde, P Bessieres, M Van De Guchte, C Nédellec Proceedings of BioNLP Shared Task 2011 Workshop, 56-64, 2011 | 42 | 2011 |
AlvisAE: a collaborative Web text annotation editor for knowledge acquisition F Papazian, R Bossy, C Nédellec Proceedings of the Sixth Linguistic Annotation Workshop, 149-152, 2012 | 40 | 2012 |
Information extraction C Nédellec, A Nazarenko, R Bossy Handbook on ontologies, 663-685, 2009 | 30 | 2009 |
Improving term extraction with linguistic analysis in the biomedical domain. W Golik, R Bossy, Z Ratkovic, C Nédellec Res. Comput. Sci. 70, 157-172, 2013 | 29 | 2013 |
Proceedings of the BioNLP Shared Task 2011 Workshop JD Kim, S Pyysalo, T Ohta, R Bossy, N Nguyen, J Tsujii Association for Computational Linguistics, Portland, OR, 2011 | 25 | 2011 |
BioNLP shared task 2013–an overview of the genic regulation network task R Bossy, P Bessières, C Nédellec Proceedings of the BioNLP Shared Task 2013 Workshop, 153-160, 2013 | 21 | 2013 |
Annotation guidelines for machine learning-based named entity recognition in microbiology C Nédellec, P Bessieres, R Bossy, A Kotoujansky, AP Manine Proc. of the ACL Workshop on Data and Text for Mining Integrative Biology, 40-54, 2006 | 20 | 2006 |