Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 469 | 2021 |
Comprehensive analysis of single cell ATAC-seq data with SnapATAC R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang, A Motamedi, AK Shiau, ... Nature communications 12 (1), 1337, 2021 | 397* | 2021 |
Chromothripsis drives the evolution of gene amplification in cancer O Shoshani, SF Brunner, R Yaeger, P Ly, Y Nechemia-Arbely, DH Kim, ... Nature 591 (7848), 137-141, 2021 | 334 | 2021 |
Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq R Fang*, M Yu*, G Li, S Chee, T Liu, AD Schmitt, B Ren Cell research 26 (12), 1345-1348, 2016 | 321 | 2016 |
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation S Preissl*, R Fang*, H Huang, Y Zhao, R Raviram, DU Gorkin, Y Zhang, ... Nature neuroscience 21 (3), 432-439, 2018 | 317 | 2018 |
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein, EN Farah, E Destici, ... Nature genetics 51 (9), 1380-1388, 2019 | 302 | 2019 |
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells Y Diao*, R Fang*, B Li*, Z Meng, J Yu, Y Qiu, KC Lin, H Huang, T Liu, ... Nature methods 14 (6), 629-635, 2017 | 278 | 2017 |
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 244 | 2021 |
Joint profiling of DNA methylation and chromatin architecture in single cells G Li, Y Liu, Y Zhang, N Kubo, M Yu, R Fang, M Kellis, B Ren Nature methods 16 (10), 991-993, 2019 | 197 | 2019 |
Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function VM Link, SH Duttke, HB Chun, IR Holtman, E Westin, MA Hoeksema, ... Cell 173 (7), 1796-1809. e17, 2018 | 176 | 2018 |
Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH R Fang, C Xia, JL Close, M Zhang, J He, Z Huang, AR Halpern, B Long, ... Science 377 (6601), 56-62, 2022 | 160 | 2022 |
Single-cell chromatin accessibility identifies pancreatic islet cell type–and state-specific regulatory programs of diabetes risk J Chiou, C Zeng, Z Cheng, JY Han, M Schlichting, M Miller, R Mendez, ... Nature genetics 53 (4), 455-466, 2021 | 148 | 2021 |
An atlas of gene regulatory elements in adult mouse cerebrum YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu, OB Poirion, B Li, ... Nature 598 (7879), 129-136, 2021 | 144 | 2021 |
Spatiotemporal DNA methylome dynamics of the developing mouse fetus Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo, RG Castanon, JR Nery, ... Nature 583 (7818), 752-759, 2020 | 107 | 2020 |
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ... PLoS computational biology 15 (4), e1006982, 2019 | 106 | 2019 |
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken, R Fang, WI Doyle, ... Cell genomics 2 (3), 2022 | 85 | 2022 |
Hyper-editing of cell-cycle regulatory and tumor suppressor RNA promotes malignant progenitor propagation Q Jiang, J Isquith, MA Zipeto, RH Diep, J Pham, ND Santos, E Reynoso, ... Cancer cell 35 (1), 81-94. e7, 2019 | 81 | 2019 |
Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... BioRxiv, 2020.03. 31.016972, 2020 | 74 | 2020 |
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ... Biorxiv, 2020.02. 29.970558, 2020 | 63 | 2020 |
SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, TM Lagler, ... Nature methods 18 (9), 1056-1059, 2021 | 58 | 2021 |