Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1268 | 2020 |
Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018 | 328 | 2018 |
Identifying cis elements for spatiotemporal control of mammalian DNA replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019 | 169 | 2019 |
Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells JC Rivera-Mulia, Q Buckley, T Sasaki, J Zimmerman, RA Didier, K Nazor, ... Genome research 25 (8), 1091-1103, 2015 | 155 | 2015 |
Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq C Marchal, T Sasaki, D Vera, K Wilson, J Sima, JC Rivera-Mulia, ... Nature protocols 13 (5), 819-839, 2018 | 153 | 2018 |
4D genome rewiring during oncogene-induced and replicative senescence S Sati, B Bonev, Q Szabo, D Jost, P Bensadoun, F Serra, V Loubiere, ... Molecular cell 78 (3), 522-538. e9, 2020 | 131 | 2020 |
Perspectives on ENCODE MRM Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison ... Nature 583 (7818), 693-698, 2020 | 120* | 2020 |
An integrative ENCODE resource for cancer genomics J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ... Nature communications 11 (1), 3696, 2020 | 114 | 2020 |
Replication timing and transcriptional control: beyond cause and effect—part III JC Rivera-Mulia, DM Gilbert Current opinion in cell biology 40, 168-178, 2016 | 110 | 2016 |
Replicating large genomes: divide and conquer JC Rivera-Mulia, DM Gilbert Molecular cell 62 (5), 756-765, 2016 | 97 | 2016 |
Copy number variation is a fundamental aspect of the placental genome RL Hannibal, EB Chuong, JC Rivera-Mulia, DM Gilbert, A Valouev, ... PLoS genetics 10 (5), e1004290, 2014 | 79 | 2014 |
Allele-specific control of replication timing and genome organization during development JC Rivera-Mulia, A Dimond, D Vera, C Trevilla-Garcia, T Sasaki, ... Genome research 28 (6), 800-811, 2018 | 73 | 2018 |
Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing V Dileep, JC Rivera-Mulia, J Sima, DM Gilbert Cold Spring Harbor symposia on quantitative biology 80, 53-63, 2015 | 69 | 2015 |
3D genome organization contributes to genome instability at fragile sites D Sarni, T Sasaki, M Irony Tur-Sinai, K Miron, JC Rivera-Mulia, ... Nature communications 11 (1), 3613, 2020 | 64 | 2020 |
DNA replication timing alterations identify common markers between distinct progeroid diseases JC Rivera-Mulia, R Desprat, C Trevilla-Garcia, D Cornacchia, H Schwerer, ... Proceedings of the National Academy of Sciences 114 (51), E10972-E10980, 2017 | 46 | 2017 |
DNA moves sequentially towards the nuclear matrix during DNA replication in vivo JC Rivera-Mulia, R Hernández-Muñoz, F Martínez, A Aranda-Anzaldo BMC cell biology 12, 1-16, 2011 | 44 | 2011 |
NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health Brown University TDA Wang Siyuan (Steven) 34, ... Nature aging 2 (12), 1090-1100, 2022 | 43 | 2022 |
Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia T Sasaki, JC Rivera-Mulia, D Vera, J Zimmerman, S Das, M Padget, ... Experimental hematology 51, 71-82. e3, 2017 | 37 | 2017 |
Rapid irreversible transcriptional reprogramming in human stem cells accompanied by discordance between replication timing and chromatin compartment V Dileep, KA Wilson, C Marchal, X Lyu, PA Zhao, B Li, A Poulet, ... Stem cell reports 13 (1), 193-206, 2019 | 25 | 2019 |
Determination of the in vivo structural DNA loop organization in the genomic region of the rat albumin locus by means of a topological approach JC Rivera-Mulia, A Aranda-Anzaldo DNA research 17 (1), 23-35, 2010 | 25 | 2010 |