Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy JM De la Rosa-Trevin, A Quintana, L Del Cano, A Zaldívar, I Foche, ... Journal of structural biology 195 (1), 93-99, 2016 | 541 | 2016 |
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs V Abrishami, A Zaldívar-Peraza, JM de la Rosa-Trevín, J Vargas, J Otón, ... Bioinformatics 29 (19), 2460-2468, 2013 | 85 | 2013 |
Alignment of direct detection device micrographs using a robust Optical Flow approach V Abrishami, J Vargas, X Li, Y Cheng, R Marabini, CÓS Sorzano, ... Journal of structural biology 189 (3), 163-176, 2015 | 75 | 2015 |
Tox_ (R) CNN: Deep learning-based nuclei profiling tool for drug toxicity screening D Jimenez-Carretero, V Abrishami, L Fernandez-de-Manuel, I Palacios, ... PLoS computational biology 14 (11), e1006238, 2018 | 71 | 2018 |
A review of resolution measures and related aspects in 3D Electron Microscopy COS Sorzano, J Vargas, J Otón, V Abrishami, JM De La Rosa-Trevin, ... Progress in biophysics and molecular biology 124, 1-30, 2017 | 67 | 2017 |
Structures of human peroxiredoxin 3 suggest self-chaperoning assembly that maintains catalytic state NA Yewdall, H Venugopal, A Desfosses, V Abrishami, Y Yosaatmadja, ... Structure 24 (7), 1120-1129, 2016 | 52 | 2016 |
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques J Vargas, V Abrishami, R Marabini, JM de la Rosa-Trevín, A Zaldivar, ... Journal of Structural Biology 183 (3), 342-353, 2013 | 41 | 2013 |
Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data V Abrishami, SL Ilca, J Gomez-Blanco, I Rissanen, JM de la Rosa-Trevín, ... Progress in Biophysics and Molecular Biology 160, 43-52, 2020 | 36 | 2020 |
Fast and accurate conversion of atomic models into electron density maps OSS Carlos, V Javier, O Joaquín, A Vahid, MRT José, FA Alejandro, ... AIMS Biophysics 2 (1), 8-20, 2015 | 36 | 2015 |
A statistical approach to the initial volume problem in single particle analysis by electron microscopy COS Sorzano, J Vargas, JM de la Rosa-Trevin, J Otón, ... Journal of structural biology 189 (3), 213-219, 2015 | 33 | 2015 |
A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function V Abrishami, JR Bilbao-Castro, J Vargas, R Marabini, JM Carazo, ... Ultramicroscopy 157, 79-87, 2015 | 30 | 2015 |
Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited COS Sorzano, M Alcorlo, JM De La Rosa-trevín, R Melero, I Foche, ... Scientific reports 5 (1), 14290, 2015 | 17 | 2015 |
Signal peptide mimicry primes Sec61 for client-selective inhibition S Rehan, D Tranter, PP Sharp, GB Craven, E Lowe, JL Anderl, ... Nature Chemical Biology 19 (9), 1054-1062, 2023 | 13 | 2023 |
A fast and accurate facial expression synthesis system for color face images using face graph and deep belief network M Sabzevari, S Toosizadeh, SR Quchani, V Abrishami 2010 International Conference on Electronics and Information Engineering 2 …, 2010 | 12 | 2010 |
Local analysis of strains and rotations for macromolecular electron microscopy maps COS Sorzano, A Martín-Ramos, F Prieto, R Melero, J Martín-Benito, ... Journal of Structural Biology 195 (1), 123-128, 2016 | 9 | 2016 |
Outlier detection for single particle analysis in Electron Microscopy COS Sorzano, J Vargas, JM de la Rosa-Trevın, A Zaldıvar-Peraza, J Otón, ... IWBBIO 2014, 950, 2014 | 8 | 2014 |
Structure of a cell entry defective human adenovirus provides insights into precursor proteins and capsid maturation X Yu, TM Mullen, V Abrishami, JT Huiskonen, GR Nemerow, VS Reddy Journal of molecular biology 434 (2), 167350, 2022 | 5 | 2022 |
Real-time pedestrian detecting and tracking in crowded and complicated scenario V Abrishami, A Rezaee, H Baherzadeh, H Abrishami IET Digital Library, 2009 | 4 | 2009 |
Cryo-EM structure of ssDNA bacteriophage ΦCjT23 provides insight into early virus evolution N Kejzar, E Laanto, I Rissanen, V Abrishami, M Selvaraj, S Moineau, ... Nature Communications 13 (1), 7478, 2022 | 3 | 2022 |
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions M Kazemi, COS Sorzano, JM Carazo, A des Georges, V Abrishami, ... Progress in Biophysics and Molecular Biology 164, 92-100, 2021 | 2 | 2021 |