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Rosa Aghdam
Rosa Aghdam
Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA
在 wisc.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
CN: a consensus algorithm for inferring gene regulatory networks using the SORDER algorithm and conditional mutual information test
R Aghdam, M Ganjali, X Zhang, C Eslahchi
Molecular BioSystems 11 (3), 942-949, 2015
392015
A neural network-based method for polypharmacy side effects prediction
R Masumshah, R Aghdam, C Eslahchi
BMC bioinformatics 22, 1-17, 2021
362021
Using informative features in machine learning based method for COVID-19 drug repurposing
R Aghdam, M Habibi, G Taheri
Journal of cheminformatics 13 (1), 70, 2021
252021
IPCA-CMI: an algorithm for inferring gene regulatory networks based on a combination of PCA-CMI and MIT score
R Aghdam, M Ganjali, C Eslahchi
PloS one 9 (4), e92600, 2014
232014
A SARS-CoV-2 (COVID-19) biological network to find targets for drug repurposing
M Habibi, G Taheri, R Aghdam
Scientific reports 11 (1), 9378, 2021
172021
The ability of different imputation methods to preserve the significant genes and pathways in cancer
R Aghdam, T Baghfalaki, P Khosravi, E Saberi Ansari
Genomics, Proteomics and Bioinformatics 15 (6), 396-404, 2017
112017
LRC: A new algorithm for prediction of conformational B-cell epitopes using statistical approach and clustering method
M Habibi, PK Bakhshi, R Aghdam
Journal of immunological methods 427, 51-57, 2015
102015
An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests
H Mahmoodi, R Aghdam, C Eslahchi
Scientific Reports 11 (1), 1-15, 2021
82021
wpLogicNet: logic gate and structure inference in gene regulatory networks
SA Malekpour, M Shahdoust, R Aghdam, M Sadeghi
Bioinformatics 39 (2), btad072, 2023
62023
Significant random signatures reveals new biomarker for breast cancer
E Saberi Ansar, C Eslahchii, M Rahimi, L Geranpayeh, M Ebrahimi, ...
BMC Medical Genomics 12, 1-14, 2019
62019
Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method
R Aghdam, M Alijanpour, M Azadi, A Ebrahimi, C Eslahchi, A Rezvan
International Journal of Biomathematics 9 (03), 1650040, 2016
52016
The structural properties of DNA regulate gene expression
S Soltani, H Askari, N Ejlali, R Aghdam
Molecular BioSystems 10 (2), 273-280, 2014
52014
A clustering approach for estimating parameters of a profile hidden Markov model
R Aghdam, H Pezeshk, SA Malekpour, S Shemehsavar, C Eslahchi
International journal of data mining and bioinformatics 8 (1), 66-82, 2013
52013
Some node ordering methods for the K2 algorithm
R Aghdam, VR Tabar, H Pezeshk
Computational Intelligence, 2018
42018
NN-RNALoc: neural network-based model for prediction of mRNA sub-cellular localization using distance-based sub-sequence profiles
NS Babaiha, R Aghdam, S Ghiam, C Eslahchi
Plos one 18 (9), e0258793, 2023
32023
Inferring gene regulatory networks by an order independent algorithm using incomplete data sets
R Aghdam, M Ganjali, P Niloofar, C Eslahchi
Journal of Applied Statistics 43 (5), 893-913, 2016
32016
Removing the association of random gene sets and survival time in cancers with positive random bias using fixed-point gene set
M Maghsoudi, R Aghdam, C Eslahchi
Scientific Reports 13 (1), 8663, 2023
12023
LSPC: An Algorithm for Inference of Gene Networks Using Bayesian Network
MGCE Ali Ebrahimi, Rosa Aghdam, Parisa Niloofar
Journal of Emerging Trends in Computing and Information Sciences 3 (5), 774-782, 2012
12012
AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides
A Darabi, S Sobhani, R Aghdam, C Eslahchi
BMC bioinformatics 25 (1), 241, 2024
2024
MiNAA: Microbiome Network Alignment Algorithm
R Nelson, R Aghdam, C Solis-Lemus
Journal of Open Source Software 9 (96), 2024
2024
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