CN: a consensus algorithm for inferring gene regulatory networks using the SORDER algorithm and conditional mutual information test R Aghdam, M Ganjali, X Zhang, C Eslahchi Molecular BioSystems 11 (3), 942-949, 2015 | 39 | 2015 |
A neural network-based method for polypharmacy side effects prediction R Masumshah, R Aghdam, C Eslahchi BMC bioinformatics 22, 1-17, 2021 | 36 | 2021 |
Using informative features in machine learning based method for COVID-19 drug repurposing R Aghdam, M Habibi, G Taheri Journal of cheminformatics 13 (1), 70, 2021 | 25 | 2021 |
IPCA-CMI: an algorithm for inferring gene regulatory networks based on a combination of PCA-CMI and MIT score R Aghdam, M Ganjali, C Eslahchi PloS one 9 (4), e92600, 2014 | 23 | 2014 |
A SARS-CoV-2 (COVID-19) biological network to find targets for drug repurposing M Habibi, G Taheri, R Aghdam Scientific reports 11 (1), 9378, 2021 | 17 | 2021 |
The ability of different imputation methods to preserve the significant genes and pathways in cancer R Aghdam, T Baghfalaki, P Khosravi, E Saberi Ansari Genomics, Proteomics and Bioinformatics 15 (6), 396-404, 2017 | 11 | 2017 |
LRC: A new algorithm for prediction of conformational B-cell epitopes using statistical approach and clustering method M Habibi, PK Bakhshi, R Aghdam Journal of immunological methods 427, 51-57, 2015 | 10 | 2015 |
An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests H Mahmoodi, R Aghdam, C Eslahchi Scientific Reports 11 (1), 1-15, 2021 | 8 | 2021 |
wpLogicNet: logic gate and structure inference in gene regulatory networks SA Malekpour, M Shahdoust, R Aghdam, M Sadeghi Bioinformatics 39 (2), btad072, 2023 | 6 | 2023 |
Significant random signatures reveals new biomarker for breast cancer E Saberi Ansar, C Eslahchii, M Rahimi, L Geranpayeh, M Ebrahimi, ... BMC Medical Genomics 12, 1-14, 2019 | 6 | 2019 |
Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method R Aghdam, M Alijanpour, M Azadi, A Ebrahimi, C Eslahchi, A Rezvan International Journal of Biomathematics 9 (03), 1650040, 2016 | 5 | 2016 |
The structural properties of DNA regulate gene expression S Soltani, H Askari, N Ejlali, R Aghdam Molecular BioSystems 10 (2), 273-280, 2014 | 5 | 2014 |
A clustering approach for estimating parameters of a profile hidden Markov model R Aghdam, H Pezeshk, SA Malekpour, S Shemehsavar, C Eslahchi International journal of data mining and bioinformatics 8 (1), 66-82, 2013 | 5 | 2013 |
Some node ordering methods for the K2 algorithm R Aghdam, VR Tabar, H Pezeshk Computational Intelligence, 2018 | 4 | 2018 |
NN-RNALoc: neural network-based model for prediction of mRNA sub-cellular localization using distance-based sub-sequence profiles NS Babaiha, R Aghdam, S Ghiam, C Eslahchi Plos one 18 (9), e0258793, 2023 | 3 | 2023 |
Inferring gene regulatory networks by an order independent algorithm using incomplete data sets R Aghdam, M Ganjali, P Niloofar, C Eslahchi Journal of Applied Statistics 43 (5), 893-913, 2016 | 3 | 2016 |
Removing the association of random gene sets and survival time in cancers with positive random bias using fixed-point gene set M Maghsoudi, R Aghdam, C Eslahchi Scientific Reports 13 (1), 8663, 2023 | 1 | 2023 |
LSPC: An Algorithm for Inference of Gene Networks Using Bayesian Network MGCE Ali Ebrahimi, Rosa Aghdam, Parisa Niloofar Journal of Emerging Trends in Computing and Information Sciences 3 (5), 774-782, 2012 | 1 | 2012 |
AFITbin: a metagenomic contig binning method using aggregate l-mer frequency based on initial and terminal nucleotides A Darabi, S Sobhani, R Aghdam, C Eslahchi BMC bioinformatics 25 (1), 241, 2024 | | 2024 |
MiNAA: Microbiome Network Alignment Algorithm R Nelson, R Aghdam, C Solis-Lemus Journal of Open Source Software 9 (96), 2024 | | 2024 |