| Benchmarking strategies for cross-species integration of single-cell RNA sequencing data Y Song, Z Miao, A Brazma, I Papatheodorou Nature Communications 14 (1), 6495, 2023 | 33 | 2023 |
| Mining alternative splicing patterns in scRNA-seq data using scASfind Y Song, G Parada, JTH Lee, M Hemberg Genome Biology 25 (1), 197, 2024 | | 2024 |
| GeneSpectra: a method for context-aware comparison of cell type gene expression across species Y Song, I Papatheodorou, A Brazma bioRxiv, 2024.06. 21.600109, 2024 | | 2024 |
| ScGOclust: leveraging gene ontology to compare cell types across distant species using scRNA-seq data Y Song, Y Hu, JAT Dow, N Perrimon, I Papatheodorou bioRxiv, 2024.01. 09.574675, 2024 | | 2024 |
| SelectBCM tool: a batch evaluation framework to select the most appropriate batch-correction methods for bulk transcriptome analysis M Mishra, L Barck, P Moreno, G Heger, Y Song, JM Thornton, ... NAR Genomics and Bioinformatics 5 (1), lqad014, 2023 | | 2023 |
