Bioconda: sustainable and comprehensive software distribution for the life sciences. B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018 | 886 | 2018 |
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions M Mann, PR Wright, R Backofen Nucleic Acids Research 45 (W1), W435–W439, 2017 | 542 | 2017 |
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ... Nucleic acids research 42 (W1), W119-W123, 2014 | 368 | 2014 |
Comparative genomics boosts target prediction for bacterial small RNAs PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ... Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013 | 258 | 2013 |
Freiburg RNA tools: a central online resource for RNA-focused research and teaching M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ... Nucleic acids research 46 (W1), 2018 | 138 | 2018 |
CPSP-tools–Exact and complete algorithms for high-throughput 3D lattice protein studies M Mann, S Will, R Backofen BMC bioinformatics 9, 1-8, 2008 | 64 | 2008 |
antaRNA: ant colony-based RNA sequence design R Kleinkauf, M Mann, R Backofen Bioinformatics 31 (19), 3114-3121, 2015 | 52 | 2015 |
MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions K Kundu, M Mann, F Costa, R Backofen Bioinformatics 30 (18), 2668-2669, 2014 | 48 | 2014 |
GLASSgo–automated and reliable detection of sRNA homologs from a single input sequence SC Lott, RA Schäfer, M Mann, R Backofen, WR Hess, B Voß, J Georg Frontiers in genetics, 124, 2018 | 43 | 2018 |
CPSP-web-tools: a server for 3D lattice protein studies M Mann, C Smith, M Rabbath, M Edwards, S Will, R Backofen Bioinformatics 25 (5), 676-677, 2009 | 42 | 2009 |
antaRNA–Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization R Kleinkauf, T Houwaart, R Backofen, M Mann BMC bioinformatics 16, 1-7, 2015 | 39 | 2015 |
CARNA—alignment of RNA structure ensembles DA Sorescu, M Möhl, M Mann, R Backofen, S Will Nucleic acids research 40 (W1), W49-W53, 2012 | 39 | 2012 |
Producing high-accuracy lattice models from protein atomic coordinates including side chains M Mann, R Saunders, C Smith, R Backofen, CM Deane Advances in bioinformatics 2012, 2012 | 32 | 2012 |
Atom mapping with constraint programming M Mann, F Nahar, N Schnorr, R Backofen, PF Stadler, C Flamm Algorithms for Molecular Biology 9, 1-12, 2014 | 31 | 2014 |
Protein folding simulation by two-stage optimization AD Ullah, L Kapsokalivas, M Mann, K Steinhöfel International Symposium on Intelligence Computation and Applications, 138-145, 2009 | 31 | 2009 |
The graph grammar library-a generic framework for chemical graph rewrite systems M Mann, H Ekker, C Flamm Theory and Practice of Model Transformations: 6th International Conference …, 2013 | 27 | 2013 |
CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems OS Alkhnbashi, A Mitrofanov, R Bonidia, M Raden, VD Tran, ... Nucleic Acids Research 49 (W1), W125-W130, 2021 | 26 | 2021 |
MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration T Wallach, ZJ Mossmann, M Szczepek, M Wetzel, R Machado, M Raden, ... Molecular Neurodegeneration 16 (1), 80, 2021 | 24 | 2021 |
Evolution of metabolic networks: a computational frame-work C Flamm, A Ullrich, H Ekker, M Mann, D Högerl, M Rohrschneider, ... Journal of Systems Chemistry 1, 1-14, 2010 | 24 | 2010 |
Classifying proteinlike sequences in arbitrary lattice protein models using LatPack M Mann, D Maticzka, R Saunders, R Backofen HFSP journal 2 (6), 396-404, 2008 | 23 | 2008 |