Rfam 12.0: updates to the RNA families database EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ... Nucleic acids research 43 (D1), D130-D137, 2015 | 1067 | 2015 |
Comparative genomics reveals insights into avian genome evolution and adaptation G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ... Science 346 (6215), 1311-1320, 2014 | 1051 | 2014 |
Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl 1), D136-D140, 2009 | 986 | 2009 |
Rfam 11.0: 10 years of RNA families SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ... Nucleic acids research 41 (D1), D226-D232, 2013 | 918 | 2013 |
A comprehensive comparison of comparative RNA structure prediction approaches PP Gardner, R Giegerich BMC bioinformatics 5 (1), 140, 2004 | 481 | 2004 |
Rfam: Wikipedia, clans and the “decimal” release PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ... Nucleic acids research 39 (suppl 1), D141-D145, 2011 | 479 | 2011 |
A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005 | 368 | 2005 |
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19), doi:10.1038/srep19233, 2016 | 352 | 2016 |
A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ... PLoS genetics 5 (7), 2009 | 283 | 2009 |
Convergent regulatory evolution and loss of flight in paleognathous birds TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ... Science 364 (6435), 74-78, 2019 | 240 | 2019 |
Towards robust and repeatable sampling methods in eDNA based studies IA Dickie, S Boyer, H Buckley, RP Duncan, P Gardner, ID Hogg, ... Molecular Ecology Resources, 2018 | 181 | 2018 |
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture J Vinther, MM Hedegaard, PP Gardner, JS Andersen, P Arctander Nucleic acids research 34 (16), e107-e107, 2006 | 166 | 2006 |
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA EK Freyhult, JP Bollback, PP Gardner Genome research 17 (1), 117-125, 2007 | 157 | 2007 |
A comparison of RNA folding measures E Freyhult, PP Gardner, V Moulton BMC bioinformatics 6 (1), 241, 2005 | 147 | 2005 |
Comparative genomic data of the Avian Phylogenomics Project G Zhang, B Li, C Li, MTP Gilbert, ED Jarvis, J Wang, TAG Consortium GigaScience 3 (26), doi:10.1186/2047-217X-3-26, 2014 | 141 | 2014 |
Essential guidelines for computational method benchmarking LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ... Genome Biology 20 (1), 125, 2019 | 139 | 2019 |
The tuatara genome reveals ancient features of amniote evolution NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ... Nature, doi.org/10.1038/s41586-020-2561-9, 2020 | 136 | 2020 |
A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity LM Malone, SL Warring, SA Jackson, C Warnecke, PP Gardner, LF Gumy, ... Nature Microbiology 5 (1), 48-55, 2020 | 136 | 2020 |
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium L Barquist, GC Langridge, DJ Turner, MD Phan, AK Turner, A Bateman, ... Nucleic acids research 41 (8), 4549-4564, 2013 | 135 | 2013 |
A VapBC Toxin-Antitoxin Module is a Post-Transcriptional Regulator of Metabolic Flux in Mycobacteria JL McKenzie, J Robson, M Berney, TC Smith, A Ruthe, PP Gardner, ... Journal of Bacteriology, 2012 | 113 | 2012 |