Interaction of polyethyleneimine-functionalized ZnO nanoparticles with bovine serum albumin S Chakraborti, P Joshi, D Chakravarty, V Shanker, ZA Ansari, SP Singh, ... Langmuir 28 (30), 11142-11152, 2012 | 157 | 2012 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 117 | 2019 |
AlphaFold2 fails to predict protein fold switching D Chakravarty, LL Porter Protein Science 31 (6), e4353, 2022 | 92 | 2022 |
Intrinsically disordered proteins/regions and insight into their biomolecular interactions P Chakrabarti, D Chakravarty Biophysical Chemistry, 2022 | 40 | 2022 |
Reassessing buried surface areas in protein–protein complexes D Chakravarty, M Guharoy, CH Robert, P Chakrabarti, J Janin Protein Science 22 (10), 1453-1457, 2013 | 40 | 2013 |
Discrimination of ligands with different flexibilities resulting from the plasticity of the binding site in tubulin S Chakraborti, D Chakravarty, S Gupta, BP Chatterji, G Dhar, A Poddar, ... Biochemistry 51 (36), 7138-7148, 2012 | 34 | 2012 |
Changes in protein structure at the interface accompanying complex formation D Chakravarty, J Janin, CH Robert, P Chakrabarti IUCrJ 2 (6), 643-652, 2015 | 32 | 2015 |
Identification of the target DNA sequence and characterization of DNA binding features of HlyU, and suggestion of a redox switch for hlyA expression in the human pathogen … D Mukherjee, A Pal, D Chakravarty, P Chakrabarti Nucleic acids research 43 (3), 1407-1417, 2015 | 24 | 2015 |
Actin–curcumin interaction: Insights into the mechanism of actin polymerization inhibition G Dhar, D Chakravarty, J Hazra, J Dhar, A Poddar, M Pal, P Chakrabarti, ... Biochemistry 54 (4), 1132-1143, 2015 | 21 | 2015 |
Structural changes in DNA-binding proteins on complexation S Poddar, D Chakravarty, P Chakrabarti Nucleic Acids Research 46 (7), 3298-3308, 2018 | 18 | 2018 |
Plausible blockers of Spike RBD in SARS-CoV2—Molecular design and underlying interaction dynamics from high-level structural descriptors S Basu, D Chakravarty, D Bhattacharyya, P Saha, HK Patra Journal of Molecular Modeling 27 (6), 191, 2021 | 16 | 2021 |
Flexibility in the N‐terminal actin‐binding domain: Clues from in silico mutations and molecular dynamics D Chakravarty, S Chakraborti, P Chakrabarti Proteins: Structure, Function, and Bioinformatics 83 (4), 696-710, 2015 | 12 | 2015 |
AlphaFold2 has more to learn about protein energy landscapes D Chakravarty, JW Schafer, EA Chen, JR Thole, LL Porter BioRxiv, 2023 | 11 | 2023 |
Distinguishing features of fold‐switching proteins D Chakravarty, JW Schafer, LL Porter Protein Science 32 (3), e4596, 2023 | 11 | 2023 |
Proline substitutions in a Mip-like peptidyl-prolyl cis-trans isomerase severely affect its structure, stability, shape and activity S Polley, D Chakravarty, G Chakrabarti, R Chattopadhyaya, S Sau Biochimie open 1, 28-39, 2015 | 11 | 2015 |
How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking D Chakravarty, GW McElfresh, PJ Kundrotas, IA Vakser Proteins: Structure, Function, and Bioinformatics 88 (8), 1070-1081, 2020 | 10 | 2020 |
ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster LL Porter, D Chakravarty, JW Schafer, EA Chen bioRxiv, 2023 | 8 | 2023 |
Identification of a covert evolutionary pathway between two protein folds D Chakravarty, S Sreenivasan, L Swint-Kruse, LL Porter Nature Communications 14 (1), 3177, 2023 | 8 | 2023 |
Structural motifs in protein cores and at protein–protein interfaces are different A Hadarovich, D Chakravarty, AV Tuzikov, N Ben‐Tal, PJ Kundrotas, ... Protein Science 30 (2), 381-390, 2021 | 7 | 2021 |
Effects of Small Molecule Calcium-Activated Chloride Channel Inhibitors on Structure and Function of Accessory Cholera Enterotoxin (Ace) of Vibrio cholerae T Chatterjee, IA Sheikh, D Chakravarty, P Chakrabarti, P Sarkar, T Saha, ... PLoS One 10 (11), e0141283, 2015 | 7 | 2015 |