The dynamic role of cohesin in maintaining human genome architecture A Agarwal, S Korsak, A Choudhury, D Plewczynski BioEssays 45 (10), 2200240, 2023 | 5 | 2023 |
Multi-scale phase separation by explosive percolation with single-chromatin loop resolution K Sengupta, M Denkiewicz, M Chiliński, T Szczepińska, AF Mollah, ... Computational and structural biotechnology journal 20, 3591-3603, 2022 | 4 | 2022 |
3D-GNOME 3.0: a three-dimensional genome modelling engine for analysing changes of promoter-enhancer contacts in the human genome M Wlasnowolski, M Kadlof, K Sengupta, D Plewczynski Nucleic Acids Research 51 (W1), W5-W10, 2023 | 2 | 2023 |
ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model AK Halder, A Agarwal, S Korsak, K Jodkowska, D Plewczynski International Conference on Pattern Recognition and Machine Intelligence …, 2023 | 1 | 2023 |
LoopSage: An energy-based Monte Carlo approach for the loop extrusion modeling of chromatin S Korsak, D Plewczynski Methods 223, 106-117, 2024 | | 2024 |
Multiscale Molecular Modelling of Chromatin with MultiMM: From Nucleosomes to the Whole Genome S Korsak, K Banecki, D Plewczynski bioRxiv, 2024.07. 26.605260, 2024 | | 2024 |
Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes K Jodkowska, Z Parteka-Tojek, A Agarwal, M Denkiewicz, S Korsak, ... bioRxiv, 2024.05. 16.594268, 2024 | | 2024 |
Machine-Learning-Based Mapping of the Ising Model to Rough Surfaces S Korsak | | 2022 |