CellProfiler: image analysis software for identifying and quantifying cell phenotypes AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ... Genome biology 7, 1-11, 2006 | 5665 | 2006 |
Example-based super-resolution WT Freeman, TR Jones, EC Pasztor IEEE Computer graphics and Applications 22 (2), 56-65, 2002 | 3548 | 2002 |
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011 | 1138 | 2011 |
Saturated reconstruction of a volume of neocortex N Kasthuri, KJ Hayworth, DR Berger, RL Schalek, JA Conchello, ... Cell 162 (3), 648-661, 2015 | 1035 | 2015 |
Adaptively sampled distance fields: A general representation of shape for computer graphics SF Frisken, RN Perry, AP Rockwood, TR Jones Proceedings of the 27th annual conference on Computer graphics and …, 2000 | 902 | 2000 |
Non-iterative, feature-preserving mesh smoothing TR Jones, F Durand, M Desbrun ACM SIGGRAPH 2003 Papers, 943-949, 2003 | 784 | 2003 |
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ... Nature genetics 51 (12), 1664-1669, 2019 | 741 | 2019 |
CellProfiler Analyst: data exploration and analysis software for complex image-based screens TR Jones, IH Kang, DB Wheeler, RA Lindquist, A Papallo, DM Sabatini, ... BMC bioinformatics 9, 1-16, 2008 | 633 | 2008 |
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ... Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009 | 454 | 2009 |
Genome-wide enhancer maps link risk variants to disease genes J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ... Nature 593 (7858), 238-243, 2021 | 417 | 2021 |
Voronoi-based segmentation of cells on image manifolds TR Jones, A Carpenter, P Golland International Workshop on Computer Vision for Biomedical Image Applications …, 2005 | 228 | 2005 |
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ... Journal of biomolecular screening 18 (10), 1321-1329, 2013 | 188 | 2013 |
Large-scale automatic reconstruction of neuronal processes from electron microscopy images V Kaynig, A Vazquez-Reina, S Knowles-Barley, M Roberts, TR Jones, ... Medical image analysis 22 (1), 77-88, 2015 | 145 | 2015 |
Pipeline for illumination correction of images for high‐throughput microscopy S Singh, MA Bray, TR Jones, AE Carpenter Journal of microscopy 256 (3), 231-236, 2014 | 121 | 2014 |
Compatibility rules of human enhancer and promoter sequences DT Bergman, TR Jones, V Liu, J Ray, E Jagoda, L Siraj, HY Kang, ... Nature 607 (7917), 176-184, 2022 | 97 | 2022 |
A siRNA screen identifies RAD21 , EIF3H , CHRAC1 and TANC2 as driver genes within the 8q23, 8q24 … SF Mahmood, N Gruel, E Chapeaublanc, A Lescure, T Jones, F Reyal, ... Carcinogenesis 35 (3), 670-682, 2014 | 90 | 2014 |
Normal improvement for point rendering TR Jones, F Durand, M Zwicker IEEE Computer Graphics and Applications 24 (4), 53-56, 2004 | 90 | 2004 |
Efficient generation of Poisson-disk sampling patterns TR Jones Journal of Graphics Tools 11 (2), 27-36, 2006 | 88 | 2006 |
Detail-directed hierarchical distance fields SF Frisken, RN Perry, TR Jones US Patent 6,396,492, 2002 | 71 | 2002 |
Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis AB Castoreno, Y Smurnyy, AD Torres, MS Vokes, TR Jones, ... Nature chemical biology 6 (6), 457-463, 2010 | 69 | 2010 |