UniProt: the universal protein knowledgebase in 2023 Nucleic acids research 51 (D1), D523-D531, 2023 | 2067 | 2023 |
De novo derivation of proteomes from transcriptomes for transcript and protein identification VC Evans, G Barker, KJ Heesom, J Fan, C Bessant, DA Matthews Nature methods 9 (12), 1207-1211, 2012 | 182 | 2012 |
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ... Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014 | 149 | 2014 |
Identifying the important HIV-1 recombination breakpoints J Archer, JW Pinney, J Fan, E Simon-Loriere, EJ Arts, M Negroni, ... PLoS computational biology 4 (9), e1000178, 2008 | 84 | 2008 |
Sequence determinants of breakpoint location during HIV-1 intersubtype recombination HA Baird, R Galetto, Y Gao, E Simon-Loriere, M Abreha, J Archer, J Fan, ... Nucleic acids research 34 (18), 5203-5216, 2006 | 78 | 2006 |
The mzquantml data standard for mass spectrometry–based quantitative studies in proteomics M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ... Molecular & cellular proteomics 12 (8), 2332-2340, 2013 | 74 | 2013 |
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis FF Gonzalez-Galarza, C Lawless, SJ Hubbard, J Fan, C Bessant, ... Omics: a journal of integrative biology 16 (9), 431-442, 2012 | 66 | 2012 |
Evidence of recombination between divergent hepatitis E viruses H Van Cuyck, J Fan, DL Robertson, P Roques Journal of virology 79 (14), 9306-9314, 2005 | 64 | 2005 |
Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti K Maringer, A Yousuf, KJ Heesom, J Fan, D Lee, A Fernandez-Sesma, ... BMC genomics 18, 1-18, 2017 | 59 | 2017 |
The distribution of HIV-1 recombination breakpoints J Fan, M Negroni, DL Robertson Infection, Genetics and Evolution 7 (6), 717-723, 2007 | 54 | 2007 |
Galaxy integrated omics: web-based standards-compliant workflows for proteomics informed by transcriptomics*[S] J Fan, S Saha, G Barker, KJ Heesom, F Ghali, AR Jones, DA Matthews, ... Molecular & Cellular Proteomics 14 (11), 3087-3093, 2015 | 40 | 2015 |
UniProt: the universal protein knowledgebase in 2023 A Bateman, MJ Martin, S Orchard, M Magrane, S Ahmad, E Alpi, ... Nucleic Acids Research 51 (D 1), D523-D531, 2023 | 24 | 2023 |
Open reading frame structure analysis as a novel genotyping tool for hepatitis E virus and the subsequent discovery of an inter-genotype recombinant J Fan Journal of general virology 90 (6), 1353-1358, 2009 | 24 | 2009 |
MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species J Fan, F Mohareb, AME Jones, C Bessant Frontiers in Plant Science 3, 164, 2012 | 19 | 2012 |
MRMaid 2.0: mining PRIDE for evidence-based SRM transitions J Fan, F Mohareb, NJ Bond, KS Lilley, C Bessant Omics: a journal of integrative biology 16 (9), 483-488, 2012 | 17 | 2012 |
A tutorial for software development in quantitative proteomics using PSI standard formats FF Gonzalez-Galarza, D Qi, J Fan, C Bessant, AR Jones Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (1), 88-97, 2014 | 7 | 2014 |
The mzqLibrary–An open source Java library supporting the HUPO‐PSI quantitative proteomics standard D Qi, H Zhang, J Fan, S Perkins, A Pisconti, DM Simpson, C Bessant, ... Proteomics 15 (18), 3152-3162, 2015 | 6 | 2015 |
UniProt and Mass Spectrometry-Based Proteomics—A 2-Way Working Relationship EH Bowler-Barnett, J Fan, J Luo, M Magrane, MJ Martin, S Orchard Molecular & Cellular Proteomics 22 (8), 2023 | 5 | 2023 |
Computational approaches to selected reaction monitoring assay design C Bessant, J Fan Mass Spectrometry Data Analysis in Proteomics, 219-235, 2013 | 1 | 2013 |
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome KA Ramsbottom, A Prakash, Y Perez-Riverol, OM Camacho, Z Sun, ... Journal of Proteome Research, 2024 | | 2024 |