The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008 | 2483 | 2008 |
RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9, 1-13, 2008 | 681 | 2008 |
Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length G Martin, AR Gruber, W Keller, M Zavolan Cell Reports 1 (6), 753-763, 2012 | 375 | 2012 |
RNAz 2.0: improved noncoding RNA detection AR Gruber, S Findeiss, S Washietl, IL Hofacker, PF Stadler Pacific Symposium on Biocomputing 15, 69-79, 2010 | 332 | 2010 |
An updated human snoRNAome H Jorjani, S Kehr, DJ Jedlinski, R Gumienny, J Hertel, PF Stadler, ... Nucleic acids research 44 (11), 5068-5082, 2016 | 251 | 2016 |
Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007 | 224 | 2007 |
Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33 L Schönemann, U Kühn, G Martin, P Schäfer, AR Gruber, W Keller, ... Genes & development 28 (21), 2381-2393, 2014 | 218 | 2014 |
A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and … AJ Gruber, R Schmidt, AR Gruber, G Martin, S Ghosh, M Belmadani, ... Genome research 26 (8), 1145-1159, 2016 | 206 | 2016 |
AREsite: a database for the comprehensive investigation of AU-rich elements AR Gruber, J Fallmann, F Kratochvill, P Kovarik, IL Hofacker Nucleic acids research 39 (suppl_1), D66-D69, 2010 | 197 | 2010 |
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs D Zünd, AR Gruber, M Zavolan, O Mühlemann Nature structural & molecular biology 20 (8), 936-943, 2013 | 185 | 2013 |
The ViennaRNA web services AR Gruber, SH Bernhart, R Lorenz RNA bioinformatics, 307-326, 2015 | 172 | 2015 |
Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan Genome biology 16, 1-26, 2015 | 167 | 2015 |
Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells AR Gruber, G Martin, P Müller, A Schmidt, AJ Gruber, R Gumienny, ... Nature communications 5 (1), 5465, 2014 | 166 | 2014 |
Cleavage Factor Im is a key regulator of 3′ UTR length AR Gruber, G Martin, W Keller, M Zavolan RNA Biology 9 (12), 1405-1412, 2012 | 159 | 2012 |
Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing S Kishore, AR Gruber, DJ Jedlinski, AP Syed, H Jorjani, M Zavolan Genome biology 14, 1-15, 2013 | 145 | 2013 |
Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation F Kratochvill, C Machacek, C Vogl, F Ebner, V Sedlyarov, AR Gruber, ... Molecular Systems Biology 7 (1), 2011 | 118 | 2011 |
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures AR Gruber, R Neuböck, IL Hofacker, S Washietl Nucleic acids research 35 (suppl_2), W335-W338, 2007 | 116 | 2007 |
Strategies for measuring evolutionary conservation of RNA secondary structures AR Gruber, SH Bernhart, IL Hofacker, S Washietl BMC bioinformatics 9 (1), 122, 2008 | 101 | 2008 |
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors AR Gruber, G Martin, W Keller, M Zavolan Wiley Interdisciplinary Reviews: RNA 5 (2), 183-196, 2014 | 95 | 2014 |
Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC AJ Gruber, R Schmidt, S Ghosh, G Martin, AR Gruber, E van Nimwegen, ... Genome biology 19, 1-17, 2018 | 59 | 2018 |