A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202, 2014 | 668 | 2014 |
Inferring gene regulatory networks from multiple microarray datasets Y Wang, T Joshi, XS Zhang, D Xu, L Chen Bioinformatics 22 (19), 2413-2420, 2006 | 361 | 2006 |
Reverse Engineering Y Wang Encyclopedia of Systems Biology, 1855-1856, 2013 | 192* | 2013 |
Network-based drug repositioning Z Wu, Y Wang, L Chen Molecular BioSystems 9 (6), 1268-1281, 2013 | 168 | 2013 |
Prediction of protein–RNA binding sites by a random forest method with combined features ZP Liu, LY Wu, Y Wang, XS Zhang, L Chen Bioinformatics 26 (13), 1616-1622, 2010 | 166 | 2010 |
Modeling gene regulation from paired expression and chromatin accessibility data Z Duren, X Chen, R Jiang, Y Wang, WH Wong Proceedings of the National Academy of Sciences 114 (25), E4914-E4923, 2017 | 140 | 2017 |
Alignment of molecular networks by integer quadratic programming Z Li, S Zhang, Y Wang, XS Zhang, L Chen Bioinformatics 23 (13), 1631-1639, 2007 | 139 | 2007 |
Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data Y Wang, S Chen, N Deng, Y Wang PLoS One 8 (11), e78518, 2013 | 137 | 2013 |
Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations Z Duren, X Chen, M Zamanighomi, W Zeng, A Satpathy, H Chang, ... Proc Natl Acad Sci U S A 115 (30), 7723-7728, 2018 | 121 | 2018 |
NOA: a novel Network Ontology Analysis method J Wang, Q Huang, ZP Liu, Y Wang, LY Wu, L Chen, XS Zhang Nucleic acids research 39 (13), e87-e87, 2011 | 115 | 2011 |
De novo prediction of RNA–protein interactions from sequence information Y Wang, X Chen, ZP Liu, Q Huang, Y Wang, D Xu, XS Zhang, R Chen, ... Molecular BioSystems 9, 133-142, 2013 | 110 | 2013 |
Overlapping community detection in complex networks using symmetric binary matrix factorization ZY Zhang, Y Wang, YY Ahn Physical Review E 87 (6), 062803, 2013 | 109 | 2013 |
Gene function prediction using labeled and unlabeled data XM Zhao, Y Wang, L Chen, K Aihara BMC bioinformatics 9 (1), 1-14, 2008 | 107 | 2008 |
Modularity optimization in community detection of complex networks XS Zhang, RS Wang, Y Wang, J Wang, Y Qiu, L Wang, L Chen Europhysics Letters 87 (3), 38002, 2009 | 103 | 2009 |
Disease-aging network reveals significant roles of aging genes in connecting genetic diseases J Wang, S Zhang, Y Wang, L Chen, XS Zhang PLoS computational biology 5 (9), e1000521, 2009 | 98 | 2009 |
Network-based analysis of complex diseases ZP Liu, Y Wang, XS Zhang, L Chen IET Systems Biology 6 (1), 22-33, 2012 | 96 | 2012 |
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains ZP Liu, Y Wang, XS Zhang, L Chen BMC systems biology 4 (2), 1-12, 2010 | 94 | 2010 |
Predicting DNA-and RNA-binding proteins from sequences with kernel methods X Shao, Y Tian, L Wu, Y Wang, L Jing, N Deng Journal of theoretical biology 258 (2), 289-293, 2009 | 84 | 2009 |
A new trust region method for nonlinear equations J Zhang, Y Wang Mathematical Methods of Operations Research 58, 283-298, 2003 | 81 | 2003 |
Risk prediction of emergency department revisit 30 days post discharge: a prospective study S Hao, B Jin, AY Shin, Y Zhao, C Zhu, Z Li, Z Hu, C Fu, J Ji, Y Wang, ... PloS one 9 (11), e112944, 2014 | 77 | 2014 |