[HTML][HTML] A high-resolution anatomical atlas of the transcriptome in the mouse embryo

G Diez-Roux, S Banfi, M Sultan, L Geffers, S Anand… - PLoS …, 2011 - journals.plos.org
Ascertaining when and where genes are expressed is of crucial importance to
understanding or predicting the physiological role of genes and proteins and how they …

[HTML][HTML] Global expression profiling reveals genetic programs underlying the developmental divergence between mouse and human embryogenesis

L Xue, JY Cai, J Ma, Z Huang, MX Guo, LZ Fu, YB Shi… - BMC genomics, 2013 - Springer
Background Mouse has served as an excellent model for studying human development and
diseases due to its similarity to human. Advances in transgenic and knockout studies in …

[HTML][HTML] A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain

CL Thompson, L Ng, V Menon, S Martinez, CK Lee… - Neuron, 2014 - cell.com
To provide a temporal framework for the genoarchitecture of brain development, we
generated in situ hybridization data for embryonic and postnatal mouse brain at seven …

[HTML][HTML] Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

A Chen, S Liao, M Cheng, K Ma, L Wu, Y Lai, X Qiu… - Cell, 2022 - cell.com
Spatially resolved transcriptomic technologies are promising tools to study complex
biological processes such as mammalian embryogenesis. However, the imbalance between …

[HTML][HTML] Genome-wide RNA tomography in the zebrafish embryo

JP Junker, ES Noel, V Guryev, KA Peterson, G Shah… - Cell, 2014 - cell.com
Advancing our understanding of embryonic development is heavily dependent on
identification of novel pathways or regulators. Although genome-wide techniques such as …

Embryo-scale, single-cell spatial transcriptomics

SR Srivatsan, MC Regier, E Barkan, JM Franks… - Science, 2021 - science.org
Spatial patterns of gene expression manifest at scales ranging from local (eg, cell-cell
interactions) to global (eg, body axis patterning). However, current spatial transcriptomics …

A single-cell transcriptome atlas profiles early organogenesis in human embryos

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, Y Nie… - Nature cell …, 2023 - nature.com
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4–6 week human embryos when …

A human cell atlas of fetal gene expression

J Cao, DR O'day, HA Pliner, PD Kingsley, M Deng… - Science, 2020 - science.org
INTRODUCTION A reference atlas of human cell types is a major goal for the field. Here, we
set out to generate single-cell atlases of both gene expression (this study) and chromatin …

[HTML][HTML] Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - Nature …, 2022 - nature.com
Molecular profiling of single cells has advanced our knowledge of the molecular basis of
development. However, current approaches mostly rely on dissociating cells from tissues …

[HTML][HTML] The changing mouse embryo transcriptome at whole tissue and single-cell resolution

P He, BA Williams, D Trout, GK Marinov, H Amrhein… - Nature, 2020 - nature.com
During mammalian embryogenesis, differential gene expression gradually builds the identity
and complexity of each tissue and organ system. Here we systematically quantified mouse …