Simulation of adsorption of DNA on carbon nanotubes

Zhao, JK Johnson - Journal of the American Chemical Society, 2007 - ACS Publications
… We report molecular dynamics simulations of DNA adsorption … We have modeled a DNA
segment with 12 base pairs (… Our molecular simulations provide a detailed look at DNA−…

Molecular dynamics simulation study of adsorption and patterning of DNA bases on the Au (111) surface

A Maleki, S Alavi, B Najafi - The Journal of Physical Chemistry C, 2011 - ACS Publications
… A goal of this work is to study the structure and orientation of DNA bases adsorbed on the
Au(111) surface with molecular dynamics simulations. We have also studied the motion …

Exploration on the mechanism of DNA adsorption on graphene and graphene oxide via molecular simulations

S Zeng, L Chen, Y Wang, J Chen - Journal of Physics D: Applied …, 2015 - iopscience.iop.org
… In summary, we have performed MD simulations to explore the adsorption of short DNA
segments on PG and GO. The ssDNA is firmly adsorbed and lies flat on the graphene surface, …

Molecular dynamics simulations of the adsorption of DNA segments onto graphene oxide

J Chen, L Chen, Y Wang, S Chen - Journal of Physics D: Applied …, 2014 - iopscience.iop.org
Simulation methods We performed MD simulations of GO absorbing DNA segments. Two …
dodecamer, which had been previously used in molecular simulations [24]. The GO model (…

Self-assembly of DNA segments on graphene and carbon nanotube arrays in aqueous solution: A molecular simulation study

X Zhao - The Journal of Physical Chemistry C, 2011 - ACS Publications
… In summary, we found from molecular simulations that short DNA segments consisting of up
to 12 … Theoretical aspects of the adsorption of normal and modified base pairs of DNA on …

Molecular Dynamics Simulations of the Adsorption and Dynamical Behavior of Single DNA Components on TiO2

S Monti, TR Walsh - The Journal of Physical Chemistry C, 2011 - ACS Publications
adsorption as a function of distance from the titanium oxide layer. The preliminary estimates
of the relative adsorption free energies of DNA … when a long DNA chain reaches the surface. …

Study on the adsorption orientation of DNA on two-dimensional MoS2 surface via molecular dynamics simulation: A vertical orientation phenomenon

F Liu, Y Zhang, H Wang, L Li, W Zhao, JW Shen… - Chemical Physics, 2020 - Elsevier
… sheet and DNA. Yet so far, the adsorption orientation and behavior of DNA on MoS 2 … The
appearance of molecular simulation method [27] could greatly enhanced our understanding on …

Gauging the Nanotoxicity of h2D-C2N toward Single-Stranded DNA: An in Silico Molecular Simulation Approach

TK Mukhopadhyay, K Bhattacharyya… - ACS applied materials & …, 2018 - ACS Publications
DNA and RNA) are the most important genetic materials for life, we have chosen adsorption
… To this regard, we perform AIMD simulations of different nucleobases adsorbed over the C 2 …

Adsorption of DNA fragments at aqueous graphite and Au (111) via integration of experiment and simulation

ZE Hughes, G Wei, KLM Drew, L Colombi Ciacchi… - Langmuir, 2017 - ACS Publications
molecular simulation with experimental SMFS measurements, we seek to make connections
between experiment, theory, and simulation, … homo-oligomeric ssDNA adsorbed at both the …

Molecular simulation of adsorption: Gibbs dividing surface and comparison with experiment

O Talu, AL Myers - AIChE journal, 2001 - Wiley Online Library
Simulated Adsorption Isotherms with Experiment Molecular simulation of adsorption in …
Adsorption on the external surface of the solid is usually ignored and Eq. 1 may be written …