CoBATCH for high-throughput single-cell epigenomic profiling

Q Wang, H Xiong, S Ai, X Yu, Y Liu, J Zhang, A He - Molecular cell, 2019 - cell.com
An efficient, generalizable method for genome-wide mapping of single-cell histone
modifications or chromatin-binding proteins is lacking. Here, we develop CoBATCH …

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

EP Mimitou, CA Lareau, KY Chen… - Nature …, 2021 - nature.com
Recent technological advances have enabled massively parallel chromatin profiling with
scATAC-seq (single-cell assay for transposase accessible chromatin by sequencing). Here …

Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues

M Bartosovic, M Kabbe, G Castelo-Branco - Nature biotechnology, 2021 - nature.com
In contrast to single-cell approaches for measuring gene expression and DNA accessibility,
single-cell methods for analyzing histone modifications are limited by low sensitivity and …

Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag

MP Meers, G Llagas, DH Janssens, CA Codomo… - Nature …, 2023 - nature.com
Chromatin profiling at locus resolution uncovers gene regulatory features that define cell
types and developmental trajectories, but it remains challenging to map and compare …

Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions

H Xiong, Y Luo, Q Wang, X Yu, A He - Nature Methods, 2021 - nature.com
Deciphering mechanisms in cell-fate decisions requires single-cell holistic reconstructions of
multidimensional epigenomic states in transcriptional regulation. Here we develop CoTECH …

Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

SJ Wu, SN Furlan, AB Mihalas, HS Kaya-Okur… - Nature …, 2021 - nature.com
Methods for quantifying gene expression and chromatin accessibility in single cells are well
established, but single-cell analysis of chromatin regions with specific histone modifications …

Joint profiling of histone modifications and transcriptome in single cells from mouse brain

C Zhu, Y Zhang, YE Li, J Lucero, MM Behrens, B Ren - Nature methods, 2021 - nature.com
Genome-wide profiling of histone modifications can reveal not only the location and activity
state of regulatory elements, but also the regulatory mechanisms involved in cell-type …

A human cell atlas of fetal chromatin accessibility

S Domcke, AJ Hill, RM Daza, J Cao, DR O'Day… - Science, 2020 - science.org
INTRODUCTION In recent years, the single-cell genomics field has made incredible
progress toward disentangling the cellular heterogeneity of human tissues. However, the …

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state

A Rotem, O Ram, N Shoresh, RA Sperling… - Nature …, 2015 - nature.com
Chromatin profiling provides a versatile means to investigate functional genomic elements
and their regulation. However, current methods yield ensemble profiles that are insensitive …

Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)

B Carter, WL Ku, JY Kang, G Hu, J Perrie… - Nature …, 2019 - nature.com
Modern next-generation sequencing-based methods have empowered researchers to assay
the epigenetic states of individual cells. Existing techniques for profiling epigenetic marks in …