Human cross-tissue cell atlases: unprecedented resources towards systematic understanding of physiology and diseases

P Zhang, S Li - Signal transduction and targeted therapy, 2022 - nature.com
Recently, three landmark cross-tissue single-cell atlases were published in Science, by the
Tabula Sapiens Consortium, 1 Eraslan et al., 2 and Domínguez Conde et al., 3 respectively …

Building a high-quality human cell atlas

O Rozenblatt-Rosen, JW Shin, JE Rood… - Nature …, 2021 - nature.com
To the Editor—Building the Human Cell Atlas (HCA) requires consistent and agile
experimental designs, standardized operating protocols (SOPs), benchmarks and quality …

From monkey single-cell atlases into a broader biomedical perspective

X Zou, X Dai, AFA Mentis, MA Esteban, L Liu… - Life …, 2022 - academic.oup.com
The cell is the fundamental constituent unit of a mammal which, in turn, depends on the
cooperative work of various cells to compose intricate life activities. Cells harbor diverse …

Single-cell atlases: shared and tissue-specific cell types across human organs

R Elmentaite, C Domínguez Conde, L Yang… - Nature Reviews …, 2022 - nature.com
The development of single-cell and spatial transcriptomics methods was instrumental in the
conception of the Human Cell Atlas initiative, which aims to generate an integrated map of …

Mapping cell types across human tissues

Z Liu, Z Zhang - Science, 2022 - science.org
Our understanding of how cells form distinct tissues and organs and interact with each other
is limited. Recent single-cell RNA sequencing (scRNA-seq) analyses have described the …

Impact of the Human Cell Atlas on medicine

JE Rood, A Maartens, A Hupalowska, SA Teichmann… - Nature medicine, 2022 - nature.com
Single-cell atlases promise to provide a 'missing link'between genes, diseases and
therapies. By identifying the specific cell types, states, programs and contexts where disease …

The human cell atlas white paper

A Regev, S Teichmann, O Rozenblatt-Rosen… - arXiv preprint arXiv …, 2018 - arxiv.org
The Human Cell Atlas (HCA) will be made up of comprehensive reference maps of all
human cells-the fundamental units of life-as a basis for understanding fundamental human …

Single-cell analysis for whole-organism datasets

AO Pisco, B Tojo, A McGeever - Annual Review of Biomedical …, 2021 - annualreviews.org
Cell atlases are essential companions to the genome as they elucidate how genes are used
in a cell type–specific manner or how the usage of genes changes over the lifetime of an …

FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets

J Ming, Z Lin, J Zhao, X Wan… - Briefings in …, 2022 - academic.oup.com
Single-cell RNA-sequencing (scRNA-seq) is being used extensively to measure the mRNA
expression of individual cells from deconstructed tissues, organs and even entire organisms …

Towards a human cell atlas: taking notes from the past

RGH Lindeboom, A Regev, SA Teichmann - Trends in Genetics, 2021 - cell.com
Comprehensively characterizing the cellular composition and organization of tissues has
been a long-term scientific challenge that has limited our ability to study fundamental and …