Single-cell RNA-seq with waterfall reveals molecular cascades underlying adult neurogenesis

J Shin, DA Berg, Y Zhu, JY Shin, J Song, MA Bonaguidi… - Cell stem cell, 2015 - cell.com
Somatic stem cells contribute to tissue ontogenesis, homeostasis, and regeneration through
sequential processes. Systematic molecular analysis of stem cell behavior is challenging …

Single-cell transcriptomic analysis defines heterogeneity and transcriptional dynamics in the adult neural stem cell lineage

BW Dulken, DS Leeman, SC Boutet, K Hebestreit… - Cell reports, 2017 - cell.com
Neural stem cells (NSCs) in the adult mammalian brain serve as a reservoir for the
generation of new neurons, oligodendrocytes, and astrocytes. Here, we use single-cell RNA …

[HTML][HTML] Single-cell transcriptomics characterizes cell types in the subventricular zone and uncovers molecular defects impairing adult neurogenesis

V Zywitza, A Misios, L Bunatyan, TE Willnow… - Cell reports, 2018 - cell.com
Neural stem cells (NSCs) contribute to plasticity and repair of the adult brain. Niches
harboring NSCs regulate stem cell self-renewal and differentiation. We used comprehensive …

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

N Habib, Y Li, M Heidenreich, L Swiech… - Science, 2016 - science.org
Single-cell RNA sequencing (RNA-Seq) provides rich information about cell types and
states. However, it is difficult to capture rare dynamic processes, such as adult …

Methods for determining spatial and temporal gene expression dynamics in single cells

A Regev, F Zhang, N Habib, Y Li… - US Patent App. 16 …, 2019 - Google Patents
Transcriptomes of individual neurons provide rich information about cell types and dynamic
states. However, it is difficult to capture rare dynamic processes, such as adult …

Single-cell transcriptomics reveals a population of dormant neural stem cells that become activated upon brain injury

E Llorens-Bobadilla, S Zhao, A Baser, G Saiz-Castro… - Cell stem cell, 2015 - cell.com
Heterogeneous pools of adult neural stem cells (NSCs) contribute to brain maintenance and
regeneration after injury. The balance of NSC activation and quiescence, as well as the …

Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq

Q Qiu, P Hu, X Qiu, KW Govek, PG Cámara, H Wu - Nature methods, 2020 - nature.com
Single-cell RNA sequencing offers snapshots of whole transcriptomes but obscures the
temporal RNA dynamics. Here we present single-cell metabolically labeled new RNA …

Identification and massively parallel characterization of regulatory elements driving neural induction

F Inoue, A Kreimer, T Ashuach, N Ahituv, N Yosef - Cell stem cell, 2019 - cell.com
Epigenomic regulation and lineage-specific gene expression act in concert to drive cellular
differentiation, but the temporal interplay between these processes is largely unknown …

Single-cell transcriptome analysis reveals cell lineage specification in temporal-spatial patterns in human cortical development

X Fan, Y Fu, X Zhou, L Sun, M Yang, M Wang… - Science …, 2020 - science.org
Neurogenesis processes differ in different areas of the cortex in many species, including
humans. Here, we performed single-cell transcriptome profiling of the four cortical lobes and …

CORTECON: a temporal transcriptome analysis of in vitro human cerebral cortex development from human embryonic stem cells

J Van De Leemput, NC Boles, TR Kiehl, B Corneo… - Neuron, 2014 - cell.com
Many neurological and psychiatric disorders affect the cerebral cortex, and a clearer
understanding of the molecular processes underlying human corticogenesis will provide …