Gene expression analysis of sorted cells by RNA-seq in Drosophila intestine

J Chen, J Li, H Huang, R Xi - Bio-protocol, 2016 - bio-protocol.org
RNA sequencing (RNA-seq) has become a popular method for profiling gene expression.
Among many applications, one common purpose is to identify differentially expressed genes …

Single‐cell RNA sequencing in Drosophila: Technologies and applications

H Li - Wiley Interdisciplinary Reviews: Developmental …, 2021 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) has emerged as a powerful tool for investigating
cell states and functions at the single‐cell level. It has greatly revolutionized transcriptomic …

[HTML][HTML] DRscDB: A single-cell RNA-seq resource for data mining and data comparison across species

Y Hu, SG Tattikota, Y Liu, A Comjean, Y Gao… - Computational and …, 2021 - Elsevier
With the advent of single-cell RNA sequencing (scRNA-seq) technologies, there has been a
spike in studies involving scRNA-seq of several tissues across diverse species including …

Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila

SE Mohr, SG Tattikota, J Xu, J Zirin, Y Hu, N Perrimon - Genetics, 2021 - academic.oup.com
Single-cell RNA sequencing (scRNAseq) experiments provide a powerful means to identify
clusters of cells that share common gene expression signatures. A major challenge in …

Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models

AJ Amaral, FF Brito, T Chobanyan, S Yoshikawa… - Frontiers in …, 2014 - frontiersin.org
RNA-sequencing (RNA-seq) is rapidly emerging as the technology of choice for whole-
transcriptome studies. However, RNA-seq is not a bias free technique. It requires large …

Analysis of Single-Cell Transcriptome Data in Drosophila

S Yousefian, MJ Musillo, J Bageritz - Drosophila: Methods and Protocols, 2022 - Springer
The fly Drosophila is a versatile model organism that has led to fascinating biological
discoveries. In the past few years, Drosophila researchers have used single-cell RNA …

Mapping and differential expression analysis from short‐read RNA‐Seq data in model organisms

QY Zhao, J Gratten, R Restuadi, X Li - Quantitative Biology, 2016 - Wiley Online Library
Recent advances in next‐generation sequencing technology allow high‐throughput RNA
sequencing (RNA‐Seq) to be widely applied in transcriptomic studies. For model organisms …

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

V Gardeux, FPA David, A Shajkofci, PC Schwalie… - …, 2017 - academic.oup.com
Motivation Single-cell RNA-sequencing (scRNA-seq) allows whole transcriptome profiling of
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …

RNA‐Seq Data Analysis: A Practical Guide for Model and Non‐Model Organisms

E Pola‐Sánchez, KM Hernández‐Martínez… - Current …, 2024 - Wiley Online Library
RNA sequencing (RNA‐seq) has emerged as a powerful tool for assessing genome‐wide
gene expression, revolutionizing various fields of biology. However, analyzing large RNA …

An automated RNA‐Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells

C Chen, H Le, CT Goudar - Biotechnology Progress, 2015 - Wiley Online Library
Recent advances in RNA‐Seq based comparative transcriptomics have opened up a unique
opportunity to understand the mechanisms of different phenotypes in bioprocessing‐related …