[HTML][HTML] Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development

DJ Anderson, FM Pauler, A McKenna, J Shendure… - Cell systems, 2022 - cell.com
Mutations are acquired frequently, such that each cell's genome inscribes its history of cell
divisions. Common genomic alterations involve loss of heterozygosity (LOH). LOH …

Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain

AY Huang, P Li, RE Rodin, SN Kim… - Proceedings of the …, 2020 - National Acad Sciences
Elucidating the lineage relationships among different cell types is key to understanding
human brain development. Here we developed parallel RNA and DNA analysis after deep …

CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development

L Ji, A Wang, S Sonthalia, DQ Naiman, L Younes… - bioRxiv, 2023 - biorxiv.org
Accurate identification of cell classes across the tissues of living organisms is central in the
analysis of growing atlases of single-cell RNA sequencing (scRNA-seq) data across …

Cerebral cortical neuron diversity and development at single-cell resolution

MB Johnson, CA Walsh - Current opinion in neurobiology, 2017 - Elsevier
Highlights•Single-cell RNA sequencing revolutionizes systematic classification of neurons.•
Classification by scRNA-seq reveals new neuronal subtypes.•Matching transcriptionally and …

ShinyCortex: exploring single-cell transcriptome data from the developing human cortex

J Kageyama, D Wollny, B Treutlein… - Frontiers in …, 2018 - frontiersin.org
Single-cell mRNA sequencing (scRNA-seq) is a powerful method to identify and classify cell
types and reconstruct differentiation trajectories within complex tissues, such as the …

Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons

J Wang, P Jenjaroenpun, A Bhinge… - Genome …, 2017 - genome.cshlp.org
The stochastic dynamics and regulatory mechanisms that govern differentiation of individual
human neural precursor cells (NPC) into mature neurons are currently not fully understood …

Significant evolutionary constraints on neuron cells revealed by single-cell transcriptomics

G Hu, J Li, GZ Wang - Genome Biology and Evolution, 2020 - academic.oup.com
Recent advances in single-cell RNA-sequencing technology have enabled us to
characterize a variety of different cell types in each brain region. However, the evolutionary …

Lessons from single cell sequencing in CNS cell specification and function

Z Li, WA Tyler, TF Haydar - Current opinion in genetics & development, 2020 - Elsevier
Modern RNA sequencing methods have greatly increased our understanding of the
molecular fingerprint of neurons, astrocytes and oligodendrocytes throughout the central …

Decoding neuronal diversification by multiplexed single-cell RNA-Seq

J Luginbühl, T Kouno, R Nakano, TE Chater… - Stem Cell Reports, 2021 - cell.com
Cellular reprogramming is driven by a defined set of transcription factors; however, the
regulatory logic that underlies cell-type specification and diversification remains elusive …

An epigenome atlas of neural progenitors within the embryonic mouse forebrain

CT Rhodes, JJ Thompson, A Mitra, D Asokumar… - Nature …, 2022 - nature.com
A comprehensive characterization of epigenomic organization in the embryonic mouse
forebrain will enhance our understanding of neurodevelopment and provide insight into …