[HTML][HTML] Isolation and RNA sequencing of single nuclei from Drosophila tissues

CN McLaughlin, Y Qi, SR Quake, L Luo, H Li - STAR protocols, 2022 - Elsevier
Many insect cells are encapsulated within the exoskeleton and cannot be dissociated intact,
making them inaccessible to single-cell transcriptomic profiling. We have used single …

Insect Insights at the Single-Cell Level: Technologies and Applications

C Sun, Y Shao, J Iqbal - Cells, 2023 - mdpi.com
Single-cell techniques are a promising way to unravel the complexity and heterogeneity of
transcripts at the cellular level and to reveal the composition of different cell types and …

Tissue dissociation for single-cell and single-nuclei RNA sequencing for low amounts of input material

G Wiegleb, S Reinhardt, A Dahl, N Posnien - Frontiers in Zoology, 2022 - Springer
Background Recent technological advances opened the opportunity to simultaneously study
gene expression for thousands of individual cells on a genome-wide scale. The …

Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila

SE Mohr, SG Tattikota, J Xu, J Zirin, Y Hu, N Perrimon - Genetics, 2021 - academic.oup.com
Single-cell RNA sequencing (scRNAseq) experiments provide a powerful means to identify
clusters of cells that share common gene expression signatures. A major challenge in …

A robust method to isolate Drosophila fat body nuclei for transcriptomic analysis

V Gupta, BP Lazzaro - Fly, 2022 - Taylor & Francis
Gene expression profiles are typically described at the level of the tissue or, often in
Drosophila, at the level of the whole organism. Collapsing the gene expression of entire …

Single‐cell RNA sequencing in Drosophila: Technologies and applications

H Li - Wiley Interdisciplinary Reviews: Developmental …, 2021 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) has emerged as a powerful tool for investigating
cell states and functions at the single‐cell level. It has greatly revolutionized transcriptomic …

Single‐Cell RNA Sequencing Analysis of the Drosophila Larval Ventral Cord

TH Nguyen, R Vicidomini, SD Choudhury… - Current …, 2021 - Wiley Online Library
Drosophila provides a powerful genetic system and an excellent model to study the
development and function of the nervous system. The fly's small brain and complex behavior …

[HTML][HTML] DRscDB: A single-cell RNA-seq resource for data mining and data comparison across species

Y Hu, SG Tattikota, Y Liu, A Comjean, Y Gao… - Computational and …, 2021 - Elsevier
With the advent of single-cell RNA sequencing (scRNA-seq) technologies, there has been a
spike in studies involving scRNA-seq of several tissues across diverse species including …

Assembly and Exploration of a Single Cell Atlas of the Drosophila Larval Ventral Cord. Identification of Rare Cell Types

R Vicidomini, TH Nguyen, SD Choudhury… - Current …, 2021 - Wiley Online Library
Single‐cell RNA sequencing provides a new approach to an old problem: how to study
cellular diversity in complex biological systems. This powerful tool has been instrumental in …

Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

BY Kim, HR Gellert, SH Church, A Suvorov… - PLoS …, 2024 - journals.plos.org
Long-read sequencing is driving rapid progress in genome assembly across all major
groups of life, including species of the family Drosophilidae, a longtime model system for …