A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q

Y Yamada, H Watanabe, F Miura, H Soejima… - Genome …, 2004 - genome.cshlp.org
Approximately half of all human genes have CpG islands (CGIs) around their promoter
regions. Although CGIs usually escape methylation, those on Chromosome X in females …

The methylome: approaches for global DNA methylation profiling

S Beck, VK Rakyan - Trends in Genetics, 2008 - cell.com
DNA methylation plays a critical role in genome function both in health and disease. Almost
60 years after the discovery of 5-methyl cytosine and∼ 25 years since the discovery that …

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

C Bock, J Walter, M Paulsen… - Nucleic acids research, 2008 - academic.oup.com
Genomic DNA methylation profiles exhibit substantial variation within the human population,
with important functional implications for gene regulation. So far little is known about the …

Simultaneous profiling of transcriptome and DNA methylome from a single cell

Y Hu, K Huang, Q An, G Du, G Hu, J Xue, X Zhu… - Genome biology, 2016 - Springer
Background Single-cell transcriptome and single-cell methylome technologies have become
powerful tools to study RNA and DNA methylation profiles of single cells at a genome-wide …

Comprehensive evaluation of the Infinium human MethylationEPIC v2 BeadChip

D Kaur, SM Lee, D Goldberg, NJ Spix, T Hinoue… - Epigenetics …, 2023 - Springer
Abstract Infinium Methylation BeadChips are widely used to profile DNA cytosine
modifications in large cohort studies for reasons of cost-effectiveness, accurate …

[HTML][HTML] Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

NM Cohen, E Kenigsberg, A Tanay - Cell, 2011 - cell.com
Mammalian CpG islands are key epigenomic elements that were first characterized
experimentally as genomic fractions with low levels of DNA methylation. Currently, CpG …

DNA methylation profiling of human chromosomes 6, 20 and 22

F Eckhardt, J Lewin, R Cortese, VK Rakyan, J Attwood… - Nature …, 2006 - nature.com
DNA methylation is the most stable type of epigenetic modification modulating the
transcriptional plasticity of mammalian genomes. Using bisulfite DNA sequencing, we report …

Spatiotemporal DNA methylome dynamics of the developing mouse fetus

Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo… - Nature, 2020 - nature.com
Cytosine DNA methylation is essential for mammalian development but understanding of its
spatiotemporal distribution in the developing embryo remains limited,. Here, as part of the …

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

R Illingworth, A Kerr, D DeSousa, H Jørgensen… - PLoS …, 2008 - journals.plos.org
CpG islands (CGIs) are dense clusters of CpG sequences that punctuate the CpG-deficient
human genome and associate with many gene promoters. As CGIs also differ from bulk …

A DNA methylation fingerprint of 1628 human samples

AF Fernandez, Y Assenov, JI Martin-Subero… - Genome …, 2012 - genome.cshlp.org
Most of the studies characterizing DNA methylation patterns have been restricted to
particular genomic loci in a limited number of human samples and pathological conditions …