Single‐cell imaging of genome organization and dynamics

L Xie, Z Liu - Molecular Systems Biology, 2021 - embopress.org
Probing the architecture, mechanism, and dynamics of genome folding is fundamental to our
understanding of genome function in homeostasis and disease. Most chromosome …

Visualizing the genome in high resolution challenges our textbook understanding

M Lakadamyali, MP Cosma - Nature methods, 2020 - nature.com
The relationship between the 4D folding of the genome and its function is an outstanding
question in biology. A range of methods that probe the folding of the genome in space and …

Computational models of large-scale genome architecture

A Rosa, C Zimmer - International review of cell and molecular biology, 2014 - Elsevier
The spatial architecture and dynamics of the genomic material in the limited volume of the
nucleus plays an important role in biological processes ranging from gene expression to …

[PDF][PDF] Integrative approaches in genome structure analysis

L Boninsegna, A Yildirim, Y Zhan, F Alber - Structure, 2022 - cell.com
New technological advances in integrated imaging, sequencing-based assays, and
computational analysis have revolutionized our view of genomes in terms of their structure …

[PDF][PDF] The magic of unraveling genome architecture and function

MP Cosma, MV Neguembor - Cell Reports, 2023 - cell.com
Over the last decades, technological breakthroughs in super-resolution microscopy have
allowed us to reach molecular resolution and design experiments of unprecedented …

Recent advances in the spatial organization of the mammalian genome

Y Kumar, D Sengupta, WA Bickmore - Journal of biosciences, 2020 - Springer
The mammalian genome is complex and presents a dynamic structural organization that
reflects function. Organization of the genome inside the mammalian nucleus impacts all …

Genome-wide mapping and analysis of chromosome architecture

AD Schmitt, M Hu, B Ren - Nature reviews Molecular cell biology, 2016 - nature.com
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

J Dekker, F Alber, S Aufmkolk, BJ Beliveau… - Molecular cell, 2023 - cell.com
The four-dimensional nucleome (4DN) consortium studies the architecture of the genome
and the nucleus in space and time. We summarize progress by the consortium and highlight …

[PDF][PDF] Genome-scale imaging of the 3D organization and transcriptional activity of chromatin

JH Su, P Zheng, SS Kinrot, B Bintu, X Zhuang - Cell, 2020 - cell.com
The 3D organization of chromatin regulates many genome functions. Our understanding of
3D genome organization requires tools to directly visualize chromatin conformation in its …

[HTML][HTML] Multiplexed imaging of nucleome architectures in single cells of mammalian tissue

M Liu, Y Lu, B Yang, Y Chen, JSD Radda, M Hu… - Nature …, 2020 - nature.com
The three-dimensional architecture of the genome affects genomic functions. Multiple
genome architectures at different length scales, including chromatin loops, domains …