[HTML][HTML] Identifying cell populations with scRNASeq

TS Andrews, M Hemberg - Molecular aspects of medicine, 2018 - Elsevier
Single-cell RNASeq (scRNASeq) has emerged as a powerful method for quantifying the
transcriptome of individual cells. However, the data from scRNASeq experiments is often …

scmap: projection of single-cell RNA-seq data across data sets

VY Kiselev, A Yiu, M Hemberg - Nature methods, 2018 - nature.com
Single-cell RNA-seq (scRNA-seq) allows researchers to define cell types on the basis of
unsupervised clustering of the transcriptome. However, differences in experimental methods …

ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

V Gardeux, FPA David, A Shajkofci, PC Schwalie… - …, 2017 - academic.oup.com
Motivation Single-cell RNA-sequencing (scRNA-seq) allows whole transcriptome profiling of
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …

Introduction to single‐cell RNA sequencing

TK Olsen, N Baryawno - Current protocols in molecular biology, 2018 - Wiley Online Library
During the last decade, high‐throughput sequencing methods have revolutionized the entire
field of biology. The opportunity to study entire transcriptomes in great detail using RNA …

Identification of cell types from single cell data using stable clustering

A Peyvandipour, A Shafi, N Saberian, S Draghici - Scientific reports, 2020 - nature.com
Single-cell RNA-seq (scRNASeq) has become a powerful technique for measuring the
transcriptome of individual cells. Unlike the bulk measurements that average the gene …

scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells

Y Cao, J Zhu, P Jia, Z Zhao - Genes, 2017 - mdpi.com
Single-cell RNA sequencing (scRNA-Seq) is rapidly becoming a powerful tool for high-
throughput transcriptomic analysis of cell states and dynamics at the single cell level. Both …

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

TA Geddes, T Kim, L Nan, JG Burchfield, JYH Yang… - BMC …, 2019 - Springer
Background Single-cell RNA-sequencing (scRNA-seq) is a transformative technology,
allowing global transcriptomes of individual cells to be profiled with high accuracy. An …

Using neural networks for reducing the dimensions of single-cell RNA-Seq data

C Lin, S Jain, H Kim, Z Bar-Joseph - Nucleic acids research, 2017 - academic.oup.com
While only recently developed, the ability to profile expression data in single cells (scRNA-
Seq) has already led to several important studies and findings. However, this technology …

Experimental considerations for single-cell RNA sequencing approaches

QH Nguyen, N Pervolarakis, K Nee… - Frontiers in cell and …, 2018 - frontiersin.org
Single-cell transcriptomic technologies have emerged as powerful tools to explore cellular
heterogeneity at the resolution of individual cells. Previous scientific knowledge in cell …

Integrating single-cell transcriptomic data across different conditions, technologies, and species

A Butler, P Hoffman, P Smibert, E Papalexi… - Nature …, 2018 - nature.com
Computational single-cell RNA-seq (scRNA-seq) methods have been successfully applied
to experiments representing a single condition, technology, or species to discover and …