[HTML][HTML] Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng… - Cell, 2012 - cell.com
Higher-order chromosomal organization for transcription regulation is poorly understood in
eukaryotes. Using genome-wide Chromatin Interaction Analysis with Paired-End-Tag …

The role of chromosome domains in shaping the functional genome

T Sexton, G Cavalli - Cell, 2015 - cell.com
The genome must be highly compacted to fit within eukaryotic nuclei but must be accessible
to the transcriptional machinery to allow appropriate expression of genes in different cell …

Post-transcriptional control of gene expression: a genome-wide perspective

J Mata, S Marguerat, J Bähler - Trends in biochemical sciences, 2005 - cell.com
Gene expression is regulated at multiple levels, and cells need to integrate and coordinate
different layers of control to implement the information in the genome. Post-transcriptional …

Deciphering the transcriptional cis-regulatory code

JO Yáñez-Cuna, EZ Kvon, A Stark - Trends in Genetics, 2013 - cell.com
Information about developmental gene expression resides in defined regulatory elements,
called enhancers, in the non-coding part of the genome. Although cells reliably utilize …

In the loop: long range chromatin interactions and gene regulation

A Dean - Briefings in functional genomics, 2011 - academic.oup.com
Enhancers, silencer and insulators are DNA elements that play central roles in regulation of
the genome that are crucial for development and differentiation. In metazoans, these …

Interplay between different epigenetic modifications and mechanisms

R Murr - Advances in genetics, 2010 - Elsevier
Cellular functions including transcription regulation, DNA repair, and DNA replication need
to be tightly regulated. DNA sequence can contribute to the regulation of these mechanisms …

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

JR Hughes, N Roberts, S McGowan, D Hay… - Nature …, 2014 - nature.com
Gene expression during development and differentiation is regulated in a cell-and stage-
specific manner by complex networks of intergenic and intragenic cis-regulatory elements …

Pioneer transcription factors, chromatin dynamics, and cell fate control

KS Zaret, SE Mango - Current opinion in genetics & development, 2016 - Elsevier
Among the diverse transcription factors that are necessary to elicit changes in cell fate, both
in embryonic development and in cellular reprogramming, a subset of factors are capable of …

Conserved non-coding elements and cis regulation: actions speak louder than words

AC Nelson, FC Wardle - Development, 2013 - journals.biologists.com
It is a truth (almost) universally acknowledged that conserved non-coding genomic
sequences function in the cis regulation of neighbouring genes. But is this a misconception …

Eukaryotic transcriptional dynamics: from single molecules to cell populations

A Coulon, CC Chow, RH Singer, DR Larson - Nature reviews genetics, 2013 - nature.com
Transcriptional regulation is achieved through combinatorial interactions between regulatory
elements in the human genome and a vast range of factors that modulate the recruitment …