Decoding neuronal diversification by multiplexed single-cell RNA-Seq

J Luginbühl, T Kouno, R Nakano, TE Chater… - Stem Cell Reports, 2021 - cell.com
Cellular reprogramming is driven by a defined set of transcription factors; however, the
regulatory logic that underlies cell-type specification and diversification remains elusive …

Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons

J Wang, P Jenjaroenpun, A Bhinge… - Genome …, 2017 - genome.cshlp.org
The stochastic dynamics and regulatory mechanisms that govern differentiation of individual
human neural precursor cells (NPC) into mature neurons are currently not fully understood …

[PDF][PDF] Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

Z Shang, D Chen, Q Wang, S Wang, Q Deng… - …, 2018 - academic.oup.com
Background Investigating cell fate decision and subpopulation specification in the context of
the neural lineage is fundamental to understanding neurogenesis and neurodegenerative …

Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts

HC Lin, J Janssens, AS Kroell, P Hornauer, M Santel… - bioRxiv, 2023 - biorxiv.org
Human neurons programmed from induced pluripotent stem cells (iPSCs) through
transcription factor (TF) overexpression are widely used to study neuronal differentiation …

An integrated cell barcoding and computational analysis pipeline for scalable analysis of differentiation at single-cell resolution

S Shen, T Werner, Y Sun, WJ Shim, S Lukowski… - bioRxiv, 2022 - biorxiv.org
This study develops a versatile cell multiplexing and data analysis platform to accelerate
knowledge gain into mechanisms of cell differentiation. We engineer a cell barcoding …

CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development

L Ji, A Wang, S Sonthalia, DQ Naiman, L Younes… - bioRxiv, 2023 - biorxiv.org
Accurate identification of cell classes across the tissues of living organisms is central in the
analysis of growing atlases of single-cell RNA sequencing (scRNA-seq) data across …

Characterization of cortical neurodevelopment in vitro using gene expression and morphology profiles from single cells

A Sundaresh, D Meistermann, R Lampela, Z Yang… - bioRxiv, 2023 - biorxiv.org
Differentiation of induced pluripotent stem cells (iPSC) towards different neuronal lineages
has enabled diverse cellular models of human neurodevelopment and related disorders …

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq

B Treutlein, QY Lee, JG Camp, M Mall, W Koh… - Nature, 2016 - nature.com
Direct lineage reprogramming represents a remarkable conversion of cellular and
transcriptome states,,. However, the intermediate stages through which individual cells …

Cerebral cortical neuron diversity and development at single-cell resolution

MB Johnson, CA Walsh - Current opinion in neurobiology, 2017 - Elsevier
Highlights•Single-cell RNA sequencing revolutionizes systematic classification of neurons.•
Classification by scRNA-seq reveals new neuronal subtypes.•Matching transcriptionally and …

[HTML][HTML] Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development

DJ Anderson, FM Pauler, A McKenna, J Shendure… - Cell systems, 2022 - cell.com
Mutations are acquired frequently, such that each cell's genome inscribes its history of cell
divisions. Common genomic alterations involve loss of heterozygosity (LOH). LOH …