A comparative atlas of single-cell chromatin accessibility in the human brain

YE Li, S Preissl, M Miller, ND Johnson, Z Wang, H Jiao… - Science, 2023 - science.org
Recent advances in single-cell transcriptomics have illuminated the diverse neuronal and
glial cell types within the human brain. However, the regulatory programs governing cell …

Chromatin accessibility dynamics in a model of human forebrain development

AE Trevino, N Sinnott-Armstrong, J Andersen, SJ Yoon… - Science, 2020 - science.org
INTRODUCTION The cerebral cortex is responsible for higher-order functions in the nervous
system and has undergone substantial expansion in size in primates. The development of …

An atlas of chromatin accessibility in the adult human brain

JF Fullard, ME Hauberg, J Bendl, G Egervari… - Genome …, 2018 - genome.cshlp.org
Most common genetic risk variants associated with neuropsychiatric disease are noncoding
and are thought to exert their effects by disrupting the function of cis regulatory elements …

[HTML][HTML] Single-cell epigenomics reveals mechanisms of human cortical development

RS Ziffra, CN Kim, JM Ross, A Wilfert, TN Turner… - Nature, 2021 - nature.com
During mammalian development, differences in chromatin state coincide with cellular
differentiation and reflect changes in the gene regulatory landscape. In the developing brain …

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

W Xu, W Yang, Y Zhang, Y Chen, N Hong, Q Zhang… - Nature …, 2022 - nature.com
Joint profiling of chromatin accessibility and gene expression from the same single cell
provides critical information about cell types in a tissue and cell states during a dynamic …

Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders

B Hu, H Won, W Mah, RB Park, B Kassim… - Nature …, 2021 - nature.com
Cellular heterogeneity in the human brain obscures the identification of robust cellular
regulatory networks, which is necessary to understand the function of non-coding elements …

Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature

E Berson, A Sreenivas, T Phongpreecha… - Nature …, 2023 - nature.com
Abstract Assay for Transposase Accessible Chromatin by sequencing (ATAC-seq)
accurately depicts the chromatin regulatory state and altered mechanisms guiding gene …

Single-cell DNA methylation and 3D genome architecture in the human brain

W Tian, J Zhou, A Bartlett, Q Zeng, H Liu, RG Castanon… - Science, 2023 - science.org
Delineating the gene-regulatory programs underlying complex cell types is fundamental for
understanding brain function in health and disease. Here, we comprehensively examined …

Single-cell genomics and regulatory networks for 388 human brains

PS Emani, JJ Liu, D Clarke, M Jensen, J Warrell… - Science, 2024 - science.org
Single-cell genomics is a powerful tool for studying heterogeneous tissues such as the
brain. Yet little is understood about how genetic variants influence cell-level gene …

Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants

C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken… - Biorxiv, 2019 - biorxiv.org
Single-cell technologies enable measure of unique cellular signatures, but are typically
limited to a single modality. Computational approaches allow integration of diverse single …