Cell-type-specific aging clocks to quantify aging and rejuvenation in neurogenic regions of the brain

MT Buckley, ED Sun, BM George, L Liu, N Schaum… - Nature Aging, 2023 - nature.com
The diversity of cell types is a challenge for quantifying aging and its reversal. Here we
develop 'aging clocks' based on single-cell transcriptomics to characterize cell-type-specific …

Many chronological aging clocks can be found throughout the epigenome: Implications for quantifying biological aging

HL Porter, CA Brown, X Roopnarinesingh, CB Giles… - Aging cell, 2021 - Wiley Online Library
Epigenetic alterations are a hallmark of aging and age‐related diseases. Computational
models using DNA methylation data can create “epigenetic clocks” which are proposed to …

Underlying features of epigenetic aging clocks in vivo and in vitro

Z Liu, D Leung, K Thrush, W Zhao, S Ratliff… - Aging cell, 2020 - Wiley Online Library
Epigenetic clocks, developed using DNA methylation data, have been widely used to
quantify biological aging in multiple tissues/cells. However, many existing epigenetic clocks …

Single-cell transcriptomic profiling of the aging mouse brain

M Ximerakis, SL Lipnick, BT Innes, SK Simmons… - Nature …, 2019 - nature.com
The mammalian brain is complex, with multiple cell types performing a variety of diverse
functions, but exactly how each cell type is affected in aging remains largely unknown. Here …

Atlas of the aging mouse brain reveals white matter as vulnerable foci

O Hahn, AG Foltz, M Atkins, B Kedir, P Moran-Losada… - Cell, 2023 - cell.com
Aging is the key risk factor for cognitive decline, yet the molecular changes underlying brain
aging remain poorly understood. Here, we conducted spatiotemporal RNA sequencing of …

Mouse aging cell atlas analysis reveals global and cell type-specific aging signatures

MJ Zhang, AO Pisco, S Darmanis, J Zou - Elife, 2021 - elifesciences.org
Aging is associated with complex molecular and cellular processes that are poorly
understood. Here we leveraged the Tabula Muris Senis single-cell RNA-seq data set to …

Gene expression hallmarks of cellular ageing

S Frenk, J Houseley - Biogerontology, 2018 - Springer
Ageing leads to dramatic changes in the physiology of many different tissues resulting in a
spectrum of pathology. Nonetheless, many lines of evidence suggest that ageing is driven …

Directly reprogrammed human neurons retain aging-associated transcriptomic signatures and reveal age-related nucleocytoplasmic defects

J Mertens, ACM Paquola, M Ku, E Hatch, L Böhnke… - Cell stem cell, 2015 - cell.com
Aging is a major risk factor for many human diseases, and in vitro generation of human
neurons is an attractive approach for modeling aging-related brain disorders. However …

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

M Ximerakis, KM Holton, RM Giadone, C Ozek… - Nature Aging, 2023 - nature.com
Aging is a complex process involving transcriptomic changes associated with deterioration
across multiple tissues and organs, including the brain. Recent studies using heterochronic …

Aging and gene expression in the primate brain

HB Fraser, P Khaitovich, JB Plotkin, S Pääbo… - PLoS …, 2005 - journals.plos.org
It is well established that gene expression levels in many organisms change during the
aging process, and the advent of DNA microarrays has allowed genome-wide patterns of …