The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

E Rodríguez-Carballo, L Lopez-Delisle… - Genes & …, 2017 - genesdev.cshlp.org
The mammalian HoxD cluster lies between two topologically associating domains (TADs)
matching distinct enhancer-rich regulatory landscapes. During limb development, the …

A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus

L Beccari, N Yakushiji-Kaminatsui… - Genes & …, 2016 - genesdev.cshlp.org
During vertebrate limb development, Hoxd genes are regulated following a bimodal strategy
involving two topologically associating domains (TADs) located on either side of the gene …

Clustering of Tissue-Specific Sub-TADs Accompanies the Regulation of HoxA Genes in Developing Limbs

S Berlivet, D Paquette, A Dumouchel, D Langlais… - PLoS …, 2013 - journals.plos.org
HoxA genes exhibit central roles during development and causal mutations have been
found in several human syndromes including limb malformation. Despite their importance …

Chromatin topology and the timing of enhancer function at the HoxD locus

E Rodríguez-Carballo… - Proceedings of the …, 2020 - National Acad Sciences
The HoxD gene cluster is critical for proper limb formation in tetrapods. In the emerging limb
buds, different subgroups of Hoxd genes respond first to a proximal regulatory signal, then to …

HOX13-dependent chromatin accessibility underlies the transition towards the digit development program

I Desanlis, Y Kherdjemil, A Mayran, Y Bouklouch… - Nature …, 2020 - nature.com
Hox genes encode transcription factors (TFs) that establish morphological diversity in the
developing embryo. The similar DNA-binding motifs of the various HOX TFs contrast with the …

[HTML][HTML] Structure, function and evolution of topologically associating domains (TADs) at HOX loci

N Lonfat, D Duboule - FEBS letters, 2015 - Elsevier
Hox genes encode transcription factors necessary for patterning the major developing
anterior to posterior embryonic axis. In addition, during vertebrate evolution, various subsets …

Distal limb patterning requires modulation of cis-regulatory activities by HOX13

R Sheth, I Barozzi, D Langlais, M Osterwalder… - Cell reports, 2016 - cell.com
The combinatorial expression of Hox genes along the body axes is a major determinant of
cell fate and plays a pivotal role in generating the animal body plan. Loss of HOXA13 and …

Boundary stacking interactions enable cross-TAD enhancer–promoter communication during limb development

TC Hung, DM Kingsley, AN Boettiger - Nature Genetics, 2024 - nature.com
Although promoters and their enhancers are frequently contained within a topologically
associating domain (TAD), some developmentally important genes have their promoter and …

Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns

M Bulajić, D Srivastava, JS Dasen, H Wichterle… - …, 2020 - journals.biologists.com
Although Hox genes encode for conserved transcription factors (TFs), they are further
divided into anterior, central and posterior groups based on their DNA-binding domain …

A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

G Andrey, T Montavon, B Mascrez, F Gonzalez… - Science, 2013 - science.org
Introduction During vertebrate limb development, gene members of the HoxD cluster are
transcribed in two subsequent waves, following a collinear strategy. Early on, genes located …