Transcriptome dynamics in early Drosophila development at tissue and single-cell resolution

P Wahle - 2019 - edoc.hu-berlin.de
The embryonic nervous system of Drosophila melanogaster derives from the neurogenic
ectoderm, which is subdivided into three distinct domains. Several key transcription factors …

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

AL McCorkindale, P Wahle, S Werner… - …, 2019 - journals.biologists.com
Cell type specification during early nervous system development in Drosophila
melanogaster requires precise regulation of gene expression in time and space. Resolving …

Quantitative Single-Embryo Profile of Drosophila Genome Activation and the Dorsal–Ventral Patterning Network

JE Sandler, A Stathopoulos - Genetics, 2016 - academic.oup.com
During embryonic development of Drosophila melanogaster, the maternal-to-zygotic
transition (MZT) marks a significant and rapid turning point when zygotic transcription begins …

Transcriptional profiling from whole embryos to single neuroblast lineages in Drosophila

A Seroka, SL Lai, CQ Doe - Developmental biology, 2022 - Elsevier
Embryonic development results in the production of distinct tissue types, and different cell
types within each tissue. A major goal of developmental biology is to uncover the “parts list” …

The Drosophila embryo at single-cell transcriptome resolution

N Karaiskos, P Wahle, J Alles, A Boltengagen, S Ayoub… - Science, 2017 - science.org
By the onset of morphogenesis, Drosophila embryos consist of about 6000 cells that express
distinct gene combinations. Here, we used single-cell sequencing of precisely staged …

[HTML][HTML] Ventral dominance governs sequential patterns of gene expression across the dorsal–ventral axis of the neuroectoderm in the Drosophila embryo

J Cowden, M Levine - Developmental biology, 2003 - Elsevier
A nuclear concentration gradient of the maternal transcription factor Dorsal establishes three
tissues across the dorsal–ventral axis of precellular Drosophila embryos: mesoderm …

Neurogenic lineage decisions with single cell resolution

A Veloso - 2022 - edoc.hu-berlin.de
Embryonic neurogenesis in Drosophila is a highly coordinated sequence of cell fate
decisions that bears many similarities to the development of the nervous system in …

Continuous transcriptome analysis reveals novel patterns of early gene expression in Drosophila embryos

JE Pérez-Mojica, L Enders, J Walsh, KH Lau… - Cell genomics, 2023 - cell.com
The transformative events during early organismal development lay the foundation for body
formation and long-term phenotype. The rapid progression of events and the limited material …

High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae

M Wang, Q Hu, T Lv, Y Wang, Q Lan, R Xiang, Z Tu… - Developmental Cell, 2022 - cell.com
Drosophila has long been a successful model organism in multiple biomedical fields. Spatial
gene expression patterns are critical for the understanding of complex pathways and …

The continuum of Drosophila embryonic development at single-cell resolution

D Calderon, R Blecher-Gonen, X Huang, S Secchia… - Science, 2022 - science.org
Drosophila melanogaster is a powerful, long-standing model for metazoan development and
gene regulation. We profiled chromatin accessibility in almost 1 million and gene expression …