The evolving concept of cell identity in the single cell era

SA Morris - Development, 2019 - journals.biologists.com
Fueled by recent advances in single cell biology, we are moving away from qualitative and
undersampled assessments of cell identity, toward building quantitative, high-resolution cell …

[HTML][HTML] Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes

AH Lang, H Li, JJ Collins, P Mehta - PLoS computational biology, 2014 - journals.plos.org
A common metaphor for describing development is a rugged “epigenetic landscape” where
cell fates are represented as attracting valleys resulting from a complex regulatory network …

[HTML][HTML] Reprogramming of genome function through epigenetic inheritance

MA Surani - Nature, 2001 - nature.com
Most cells contain the same set of genes and yet they are extremely diverse in appearance
and functions. It is the selective expression and repression of genes that determines the …

[PDF][PDF] Next-generation lineage tracing and fate mapping to interrogate development

S VanHorn, SA Morris - Developmental cell, 2021 - cell.com
Lineage tracing and fate mapping, overlapping yet distinct disciplines to follow cells and
their progeny, have evolved rapidly over the last century. Lineage tracing aims to identify all …

[HTML][HTML] Experimental evolution for cell biology

J Helsen, G Sherlock, G Dey - Trends in Cell Biology, 2023 - cell.com
Evolutionary cell biology explores the origins, principles, and core functions of cellular
features and regulatory networks through the lens of evolution. This emerging field relies …

[HTML][HTML] Asynchronous fate decisions by single cells collectively ensure consistent lineage composition in the mouse blastocyst

N Saiz, KM Williams, VE Seshan… - Nature …, 2016 - nature.com
Intercellular communication is essential to coordinate the behaviour of individual cells
during organismal development. The preimplantation mammalian embryo is a paradigm of …

[HTML][HTML] Global expression profiling reveals genetic programs underlying the developmental divergence between mouse and human embryogenesis

L Xue, JY Cai, J Ma, Z Huang, MX Guo, LZ Fu, YB Shi… - BMC genomics, 2013 - Springer
Background Mouse has served as an excellent model for studying human development and
diseases due to its similarity to human. Advances in transgenic and knockout studies in …

Leveling Waddington: the emergence of direct programming and the loss of cell fate hierarchies

J Ladewig, P Koch, O Brüstle - Nature reviews Molecular cell biology, 2013 - nature.com
For decades, Waddington's concept of the'epigenetic landscape'has served as an educative
hierarchical model to illustrate the progressive restriction of cell differentiation potential …

A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis

X Ma, Z Zhao, L Xiao, W Xu, Y Kou, Y Zhang, G Wu… - Nature …, 2021 - nature.com
Complex biological processes such as embryogenesis require precise coordination of cell
differentiation programs across both space and time. Using protein-fusion fluorescent …

[PDF][PDF] Pluripotency factors are repurposed to shape the epigenomic landscape of neural crest cells

AS Hovland, D Bhattacharya, AP Azambuja, D Pramio… - Developmental cell, 2022 - cell.com
Yamanaka factors are essential for establishing pluripotency in embryonic stem cells, but
their function in multipotent stem cell populations is poorly understood. Here, we show that …