Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain

AY Huang, P Li, RE Rodin, SN Kim… - Proceedings of the …, 2020 - National Acad Sciences
Elucidating the lineage relationships among different cell types is key to understanding
human brain development. Here we developed parallel RNA and DNA analysis after deep …

Cerebral cortical neuron diversity and development at single-cell resolution

MB Johnson, CA Walsh - Current opinion in neurobiology, 2017 - Elsevier
Highlights•Single-cell RNA sequencing revolutionizes systematic classification of neurons.•
Classification by scRNA-seq reveals new neuronal subtypes.•Matching transcriptionally and …

Significant evolutionary constraints on neuron cells revealed by single-cell transcriptomics

G Hu, J Li, GZ Wang - Genome Biology and Evolution, 2020 - academic.oup.com
Recent advances in single-cell RNA-sequencing technology have enabled us to
characterize a variety of different cell types in each brain region. However, the evolutionary …

Single-cell sequencing of brain cell transcriptomes and epigenomes

EJ Armand, J Li, F Xie, C Luo, EA Mukamel - Neuron, 2021 - cell.com
Single-cell sequencing technologies, including transcriptomic and epigenomic assays, are
transforming our understanding of the cellular building blocks of neural circuits. By directly …

Molecular diversity and specializations among the cells of the adult mouse brain

A Saunders, EZ Macosko, A Wysoker, M Goldman… - Cell, 2018 - cell.com
The mammalian brain is composed of diverse, specialized cell populations. To
systematically ascertain and learn from these cellular specializations, we used Drop-seq to …

A single-cell atlas of cell types, states, and other transcriptional patterns from nine regions of the adult mouse brain

A Saunders, E Macosko, A Wysoker, M Goldman… - BioRxiv, 2018 - biorxiv.org
The mammalian brain is composed of diverse, specialized cell populations, few of which we
fully understand. To more systematically ascertain and learn from cellular specializations in …

Lessons from single cell sequencing in CNS cell specification and function

Z Li, WA Tyler, TF Haydar - Current opinion in genetics & development, 2020 - Elsevier
Modern RNA sequencing methods have greatly increased our understanding of the
molecular fingerprint of neurons, astrocytes and oligodendrocytes throughout the central …

Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories

A Pokhilko, AE Handel, F Curion, V Volpato… - Genome …, 2021 - genome.cshlp.org
Single-cell RNA sequencing (scRNA-seq) is a widely used method for identifying cell types
and trajectories in biologically heterogeneous samples, but it is limited in its detection and …

Disentangling neural cell diversity using single-cell transcriptomics

JF Poulin, B Tasic, J Hjerling-Leffler, JM Trimarchi… - Nature …, 2016 - nature.com
Cellular specialization is particularly prominent in mammalian nervous systems, which are
composed of millions to billions of neurons that appear in thousands of different'flavors' and …

Cross-species Transcriptomic Comparison of In Vitro and In Vivo Mammalian Neural Cells

PR LoVerso, CM Wachter, F Cui - Bioinformatics and Biology …, 2015 - journals.sagepub.com
The mammalian brain is characterized by distinct classes of cells that differ in morphology,
structure, signaling, and function. Dysregulation of gene expression in these cell populations …