Short-read sequencing technologies for transcriptional analyses

SA Simon, J Zhai, RS Nandety… - Annual Review of …, 2009 - annualreviews.org
The technological advances in DNA sequencing over the past five years have changed our
approaches to gene expression analysis, fundamentally altering the basic methods used …

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

R Lister, BD Gregory, JR Ecker - Current opinion in plant biology, 2009 - Elsevier
The sudden availability of DNA sequencing technologies that rapidly produce vast amounts
of sequence information has triggered a paradigm shift in genomics, enabling massively …

Applications of ultra-high-throughput sequencing

S Fox, S Filichkin, TC Mockler - Plant Systems Biology, 2009 - Springer
The genomics era has enabled scientists to more readily pose truly global questions
regarding mutation, evolution, gene and genome structure, function, and regulation. Just as …

Next-generation sequencing technologies for gene expression profiling in plants

M Jain - Briefings in functional genomics, 2012 - academic.oup.com
Next-generation sequencing (NGS) provides a better approach to gene expression profiling
with several advantages. The power of NGS along with novel molecular techniques and …

Advances in plant genome sequencing

JP Hamilton, C Robin Buell - The Plant Journal, 2012 - Wiley Online Library
The study of plant biology in the 21st century is, and will continue to be, vastly different from
that in the 20th century. One driver for this has been the use of genomics methods to reveal …

Genome sequencing approaches and successes

M Imelfort, J Batley, S Grimmond, D Edwards - Plant Genomics: Methods …, 2009 - Springer
Sequence data is crucial to our understanding of crop growth and development, as
differences in DNA sequence are responsible for almost all of the heritable differences …

Discovering new biology through sequencing of RNA

APM Weber - Plant physiology, 2015 - academic.oup.com
Abstract Sequencing of RNA (RNA-Seq) was invented approximately 1 decade ago and has
since revolutionized biological research. This update provides a brief historic perspective on …

Genomic limitations to RNA sequencing expression profiling

CD Hirsch, NM Springer, CN Hirsch - The Plant Journal, 2015 - Wiley Online Library
The field of genomics has grown rapidly with the advent of massively parallel sequencing
technologies, allowing for novel biological insights with regards to genomic, transcriptomic …

Catalyzing plant science research with RNA-seq

LBB Martin, Z Fei, JJ Giovannoni… - Frontiers in plant …, 2013 - frontiersin.org
Next generation DNA sequencing technologies are driving increasingly rapid, affordable
and high resolution analyses of plant transcriptomes through sequencing of their associated …

High throughput DNA sequencing: the new sequencing revolution

M Delseny, B Han, YI Hsing - Plant Science, 2010 - Elsevier
Improvements in technology have rapidly changed the field of DNA sequencing. These
improvements are boosted by bio-medical research. Plant science has benefited from this …